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gtaaaaagaaaagtataaaatactggctcatttggtattagagaactcttgtggttacttgaactattgacaactaataactcctctgacataattttttttttttgagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG
species | Glycine max |
transcript | GLYMA12G28730.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|298183850|gb|HO029063.1|HO029063
genomic: GAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|151408377|gb|EV278185.1|EV278185
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|6567403|gb|AW235014.1|AW235014
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|192295002|gb|FG986721.1|FG986721
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|7924283|gb|AW830309.1|AW830309
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|298193971|gb|HO040619.1|HO040619
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAGGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|193324085|gb|FK289551.1|FK289551
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTEST: gi|37995772|gb|CF807361.1|CF807361
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
EST: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAG AATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
genomic: GTCACGTCATAAGAACCAGCATTGGTGGCCGAAATGGTCAGTCTAAGCAGgtaaaaagaa ... gagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTT
aactattgacaactaataactcctctgacataattttttttttttgagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG
ttttttttttttg CT-rich tract
acataatttttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaagaaaagtataaaatactggctcatttggtattagagaactcttgtggttacttgaactattgacaactaataactcctctgacataattttttttttttgagttgacagAATGTTAGTTATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA