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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctattgctttgtacattctagtcttgagtatccatatgttgcatcatgtatgtccaattctgaaataatacgtctgcatgaagGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTG

Basic information

species Glycine max
transcript GLYMA12G28670.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28670.1 (Glycine max), 3'ss of exon 5
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 6
---gtaa-gctattgctttgta----cattctagtcttgagtatccatatgttgcatcatgtatgtccaattctga--aataata--cgtctgcatgaagGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTG
    ||| | | || | |  |     |||||||   ||  |  | |   | | ||  | ||  |||  ||| ||     || |||    ||||  |  || ||||||||| ||||| | |||| |||||||||||||| |  || |||||||| |||||||| || || |||| ||| || || |||||||| ||||| |
attttaatgttcttacatcatgaatgcattctaccattttgctttccagtttagctccttgattgtttaatccttcctgatcatagttttctgtgtatagTTTGAGGAGGCTGCAATTGCTGCATTGAAGAGAGCATTAGGTGCTTTGAACACACATCTTGCTTCAAACACTTTCCTGGTGGGGCATTCTGTCACCCTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079367|gb|GD877095.1|GD877095
EST:     TCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctatt ... ctgcatgaagGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|12689164|gb|BG155500.1|BG155500
EST:     TCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTCAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctatt ... ctgcatgaagGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAAC
EST: gi|254316505|gb|GR828042.1|GR828042
EST:     TCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCA                         GTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAAC
genomic: TCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTCCAgtaagctatt ... ctgcatgaagGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatccatatgttgcatcatgtatgtccaattctgaaataatacgtctgcatgaagGTTGAGGAGGGTGCAAATTCTGCGTTGAAGAGAGCATTTGAGGCCTTGAACACTCATCTTGCCTCCAATACTTACCTTGTTGGCCATTCTGTTACCCTTG
                           aattctgaaataata  TA-rich tract