Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtttctttctttctttccatttcacgcttttccttttttaattttatcttcatttttgtgattttctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT

Basic information

species Glycine max
transcript GLYMA12G28670.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192299444|gb|FG990782.1|FG990782
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|24136950|gb|BU927460.1|BU927460
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|298172183|gb|HO021775.1|HO021775
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192315107|gb|FK009931.1|FK009931
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGT-ATCAACGCTTTGTTCTCATCTTCTGCCATTGAT
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGA-CAACGCTTTGTTCTCATCTTCTGCCATTGAT
EST: gi|6134030|gb|AW132480.1|AW132480
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|192333250|gb|FK026131.1|FK026131
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213618494|gb|DB963395.1|DB963395
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|298184141|gb|HO029354.1|HO029354
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|41145772|gb|CK605983.1|CK605983
EST:     GGAACCGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|254316505|gb|GR828042.1|GR828042
EST:     GTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213604365|gb|DB970597.1|DB970597
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGG
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGG
EST: gi|24135648|gb|BU926158.1|BU926158
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|213587115|gb|DB959536.1|DB959536
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|7233496|gb|AW568841.1|AW568841
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|209709460|gb|BW668376.1|BW668376
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAAACGCTTTGTTCTCATCTTCTGCCATTGAT
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAA-CGCTTTGTTCTCATCTTCTGCCATTGAT
EST: gi|298191545|gb|HO039024.1|HO039024
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTTTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|208215289|gb|GE011072.1|GE011072
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|6134008|gb|AW132458.1|AW132458
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
EST: gi|15814101|gb|BI786376.1|BI786376
EST:     GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACG                         TTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA
genomic: GGAAACGCCCGATGGTCCAGTCTTTGAGAGCAATGCAATCGCTCGTTACGgtatgtttct ... ctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacgcttttccttttttaattttatcttcatttttgtgattttctcttttcagTTGCTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT
               ttttaat  putative branch site (score: 3)
                          tcttcatttttgtgat  putative PPT
             ttttttaattttatct  TA-rich tract