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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcacaacagaaatatacaaaccatgtttatgttgttagattttagttggttgcttttgatctgatttttcttcttttccatgttattccaatggaattgtaaagttttcacagatcctttgttcctatttgctttttcaatttaagctaacttgagaattctacttgtgatcagCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAG

Basic information

species Glycine max
transcript GLYMA12G25240.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G25240.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g02660.t01 (Vitis vinifera), 3'ss of exon 2
gttcacaacagaaata-tacaaaccatgtttatgttgttagattttagttggttgcttttgatctgatttttcttcttttccatgttattccaatggaattgtaaagttttcacagatcctttgttcctatttgctttttcaatttaagctaacttgagaattctacttgtgatcagCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAG
          |||||| | |||  | |||||   || || |||||       ||  |||   | || ||| | | ||| | |  ||  ||  |   || ||  ||||| ||   ||  | | |||  ||||||  ||| |   |  || || |  ||||  || ||||||||| ||| |||| ||  || | | |||||||||||||||||||||||| |||||  |  | || ||| ||||||||||||| |||||  | || || ||||| || |
-----gtctggaaatagttcaattcgtgtttgaatttttggattt-------tttttttgtgtttgttttatttccttctaccagtggttagagctgactt-caaagtctt---aggacttatgt--ctatttattttctttctacaacctgatgtgagtgttgtacttgtgagcagTTATTCTGCACATTTAGCTCAAGAGAAGAAAAGAGCAGAACTATGTCTTGTTTGAGGCATCGAGTTCTTCCTCCTCAGTTGTTGTTGAAGTGGCCAAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttcctatttgctttttcaatttaagctaacttgagaattctacttgtgatcagCTATTTTGTCCACTCATCTCAAGAGAAGAAAAGAGCAGAACCATGTCCGGCCTAAGACATAGAGTTCTTCCTCCACAGTTACTTTTAAAATGGCCTAAAG
                         agctaac  putative branch site (score: 2)
                                       ttctactt  putative PPT
             tttttcaatttaa  TA-rich tract