1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acaatgagtgttcaaagaatcgtcctattgtggatttccatatctatgtcaccatatattttatagaacacatatttcaatctttgtaggtttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTATGTTCTGAATGTTCATCTGATGATGATATGAAGAAACCC
species | Glycine max |
transcript | GLYMA12G20180.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGAEST: gi|20075995|gb|BQ094778.1|BQ094778
genomic: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGA
EST: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTG GTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGA
genomic: CCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGgtaagactcg ... tttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGA
atgtcaccatatattttatagaacacatatttcaatctttgtaggtttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTATGTTCTGAATGTTCATCTGATGATGATATGAAGAAACCC
tttcttgt CT-rich tract
atatattttatagaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatgagtgttcaaagaatcgtcctattgtggatttccatatctatgtcaccatatattttatagaacacatatttcaatctttgtaggtttcttgtagGTACCATCCTGCTTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGATCATTTTGTATGTTCTGAATGTTCATCTGATGATGATATGAAGAAACCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - tgagtgt
- - - - - - - - - - - -cctattg
- - - - - - - - - - - - - - - - - - - - - - - tgtcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacat