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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaccctcccttcagccgttttatatatatatatatatatatatatatatatatatatgatcgatctctttattttccttattagcagctaggcattatcaatgatgtgctttgttacttgcagCTGATCAATAAGAAGCCTCAAGTGATTCAGGAGTACGAGTCAGGGAAGGCCATTCTAAACCAGCATATAATTGGCAAGTTGGGAAAAGTCCTTGGGGCTA

Basic information

species Glycine max
transcript GLYMA12G15410.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G15410.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os08g27850.2 (Oryza sativa), 3'ss of exon 3
gtattaccctcccttcagccgttttatatatatatatatatatatatatatatatatatatgatcgatctctttattttccttattagcagctaggcattatcaatgatgtgctttgttacttgcagCTGATCAATAAGAAGCCTCAAGTGATTCAGGAGTACGAGTCAGGGAAGGCCATTCTAAACCAGCATATAATTGGCAAGTTGGGAAAAGTCCTTGGGGCTA
        | |  | || || |   || |    || |       | || ||  |  | ||  |  |        |  | |   | || |    |   |  ||  ||| |||| ||||  |    ||| |||||||| ||||||| || ||||| ||||||||||||||||| || || ||||  |||||||| || || || ||| | | ||  |  |||||  | |
-----gtgccctgtccaaccatacaattttagaatttcctagcgt-tacattaacttttaccacagccactcgcacatac---actaaccttcaactaaaat--atggtgtgttttgcaa---acagATGATCAATGAGAAGCCCCAGGTGATCCAGGAGTACGAGTCAGGTAAAGCTATTCCGAACCAGCAGATCATCGGGAAGCTTGAAAGGGCTCTTGGAACAA

upper sequence: GLYMA12G15410.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G58680.1 (Arabidopsis thaliana), 3'ss of exon 3
gtattaccctcccttcagccgttttatatatatatatatatatatatatatatatatatatgatcgatctctttattttcctt-attagcagctaggcattatcaatgatgtgctttgttacttgcagCTGATCAATAAGAAGCCTCAAGTGATTCAGGAGTACGAGTCAGGGAAGGCCATTCTAAACCAGCATATAATTGGCAAGTTGGGAAAAGTCCTTGGGGCTA
                                      ||  |  || | | | | ||| |      |   |||| | || ||  | || |  |     | ||     ||| | |||| |   || ||||||||||| ||||||| |||||||| || || |||||||| ||||| || ||||  || || || ||  ||   ||| |||  |  |  ||||| ||||
-------------------------------------gtactttcatttttctctgtatctttctctttcttttactgtctttcgtcagtaattgaat-tcattgt--atgggttttgat-tctgtagCTGATCAATGAGAAGCCACAAGTGATCCAAGAATACGAGTCTGGGAAAGCAATTCCGAATCAACAGATCCTTTCAAAGCTGGAGAGGGCACTTGGTGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattttccttattagcagctaggcattatcaatgatgtgctttgttacttgcagCTGATCAATAAGAAGCCTCAAGTGATTCAGGAGTACGAGTCAGGGAAGGCCATTCTAAACCAGCATATAATTGGCAAGTTGGGAAAAGTCCTTGGGGCTA
                                        ctttgtt  CT-rich tract
                         attatcaat  TA-rich tract