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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttcccaaataaaccccaatttcgtgatatttttttgataccagaaatagttctgttcatgtcagataaaaaattcttttttgagtatttaagttcaaacttaaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcagTTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAAC

Basic information

species Glycine max
transcript GLYMA12G10710.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G10710.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv12s0059g02310.t01 (Vitis vinifera), 3'ss of exon 2
gtaagttttcccaaataaaccccaatttcgtgatatttttttgataccagaaatagttctgttcatgtcagataaaaaattcttttttgagtatttaagttcaaacttaaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcagTTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAAC
                                        ||  | | | || ||   |     |  ||    ||   ||||| |||    |  ||   |||    ||    | |  |   ||      |  |||    |  |   ||  |||||   |  ||||| |||||||||||||| |||||||||||||||||||||||||| |||||| | || |||||||||||||| |||||||| || |||||||| || |||
---------------------------------------gttagttctaaaactaaaacca---aaatctaccaactgattctatttcttcttctttttttctttttttgtttctatgaagaaggatctctgatatttcatctttttgt-ttttgcact-tagTTTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAGGAGCTGAGCCGTGAATTAGGGTTAGAGCCCTTGCAGGTCAAATTTTGGTTCCAAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207727012|gb|GD702936.1|GD702936
EST:     AAGAAGCGTTACCACCGCCACACCCAACACCATATCCAAGAAATGGAAGC                         TTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAG
genomic: AAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCgtaagttttc ... tgttttgcagTTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaacttttggttaaactggagcaaataaaaaaattggatgaattttgttttgcagTTTTTTCAAGGAGTGTCCGCACCCAGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTTCAGAAC
                                          ttttgtttt  CT-rich tract
                      aaataaaaaaattgga  TA-rich tract