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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttagataacaaatttccgtcggacaaaacttttctgttttattgaacaataacattacattactggcttcatttccttgtctgtgttcgtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTAACTTGCATTAAGTTTAATTTTAAAATTGTTTTTGGATCTTTTGTGTCTG

Basic information

species Glycine max
transcript GLYMA12G10160.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524490|gb|BU083301.1|BU083301
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|7795530|gb|AW780927.1|AW780927
EST:     GCAATTNTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAAT-ATCCGGACGAG-TGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|213615179|gb|DB964987.1|DB964987
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGT-TTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|213602714|gb|DB956622.1|DB956622
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|192296282|gb|FG989779.1|FG989779
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|11688310|gb|BF595986.1|BF595986
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|213607070|gb|DB965068.1|DB965068
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|8283136|gb|BE020697.1|BE020697
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|16347966|gb|BI973561.1|BI973561
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298194718|gb|HO043190.1|HO043190
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|8670433|gb|BE191540.1|BE191540
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|192318406|gb|FK006526.1|FK006526
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|209721122|gb|BW666383.1|BW666383
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGT-TTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|15661657|gb|BI699028.1|BI699028
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|7233922|gb|AW569264.1|AW569264
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|26268656|gb|CA819719.1|CA819719
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298176552|gb|HO023139.1|HO023139
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|31310676|gb|CD395879.1|CD395879
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|207706164|gb|GD688472.1|GD688472
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|41145415|gb|CK605626.1|CK605626
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|17153159|gb|BM143092.1|BM143092
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|9820150|gb|BE555660.1|BE555660
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCC                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298174006|gb|HO017342.1|HO017342
EST:     GCAATTTTCTGATTCCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298181494|gb|HO022933.1|HO022933
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACG
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACG
EST: gi|298180823|gb|HO022262.1|HO022262
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|19346276|gb|BM891156.1|BM891156
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|213606161|gb|DB982462.1|DB982462
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGT-TTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|13477962|gb|BG507626.1|BG507626
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGNTTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|9565259|gb|BE474768.1|BE474768
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|213611158|gb|DB975004.1|DB975004
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|8285851|gb|BE023410.1|BE023410
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298193393|gb|HO033827.1|HO033827
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|192319852|gb|FK013264.1|FK013264
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|13477522|gb|BG507370.1|BG507370
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298173327|gb|HO016663.1|HO016663
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|6134718|gb|AW133111.1|AW133111
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|8402779|gb|BE058413.1|BE058413
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298199386|gb|HO042749.1|HO042749
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|12691344|gb|BG157680.1|BG157680
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|10710274|gb|BF009998.1|BF009998
EST:     GCAATTCTCTGATTTCTCACACCCAAACATTGCCTGCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGATGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|19937178|gb|BQ081183.1|BQ081183
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|7234057|gb|AW569398.1|AW569398
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298197525|gb|HO045004.1|HO045004
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|38192971|gb|CF922177.1|CF922177
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|31561723|gb|CD487561.1|CD487561
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|10256578|gb|BE824344.1|BE824344
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298170349|gb|HO018973.1|HO018973
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|38192788|gb|CF921994.1|CF921994
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|26057719|gb|CA800633.1|CA800633
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|192306257|gb|FG996857.1|FG996857
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|192319853|gb|FK013265.1|FK013265
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|298187932|gb|HO031889.1|HO031889
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGA
EST: gi|298166852|gb|HO010291.1|HO010291
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGCGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|24136999|gb|BU927509.1|BU927509
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|9898658|gb|BE607626.1|BE607626
EST:     GCAATATTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|192327745|gb|FK022374.1|FK022374
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|31311933|gb|CD397136.1|CD397136
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|57574382|gb|CX547357.1|CX547357
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|192318405|gb|FK006525.1|FK006525
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|58021186|gb|CX707928.1|CX707928
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|6912827|gb|AW394311.1|AW394311
EST:     GCAATTTTCTGATTTCTCACACCCANACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACCAGGTG
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTG
EST: gi|38192895|gb|CF922101.1|CF922101
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|15203417|gb|BI426185.1|BI426185
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|22524621|gb|BU083432.1|BU083432
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
EST: gi|15286767|gb|BI470658.1|BI470658
EST:     GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCG                         GGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA
genomic: GCAATTTTCTGATTTCTCACACCCAAACATTGCCTTCGATTACTCCACCGgttagattca ... gtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacaataacattacattactggcttcatttccttgtctgtgttcgtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTAACTTGCATTAAGTTTAATTTTAAAATTGTTTTTGGATCTTTTGTGTCTG
   caataac  putative branch site (score: 2)
                                          ttcgttt  putative PPT
     ataacattacatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcttagataacaaatttccgtcggacaaaacttttctgttttattgaacaataacattacattactggcttcatttccttgtctgtgttcgtttatgcagGGACCCTACTCTCTGAAGATGACACTGAAGAATGATCGGGACGAGGTGTTAACTTGCATTAAGTTTAATTTTAAAATTGTTTTTGGATCTTTTGTGTCTG

- - - - - - - - - - - - -caaaact
- - - - - - - - - - - - - - - - -ttctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttactgg