1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atttttgtcaaatgtttttcaaattcaccttctcgctgtggtaataaataataacttgggcatccaataatgttggaaacttaacttcatatatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCT
species | Glycine max |
transcript | GLYMA12G09720.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAG GCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATEST: gi|15288064|gb|BI471955.1|BI471955
genomic: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAGgtatgcttta ... atatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATAT
EST: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAG GCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATEST: gi|31476111|gb|CD418139.1|CD418139
genomic: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAGgtatgcttta ... atatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATAT
EST: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAG GCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATEST: gi|192296222|gb|FG989763.1|FG989763
genomic: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAGgtatgcttta ... atatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATAT
EST: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAG GCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATEST: gi|5760499|gb|AI965862.1|AI965862
genomic: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAGgtatgcttta ... atatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATAT
EST: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAG GCGTTGCAGGACAGCAGCGCAAGACGCAA
genomic: GGTTAACAGGTGACAATTCTCCACCAATAAACACGAAGGTGACTGCTAAGgtatgcttta ... atatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAA
aaataataacttgggcatccaataatgttggaaacttaacttcatatatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCT
ttaacttcatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttgtcaaatgtttttcaaattcaccttctcgctgtggtaataaataataacttgggcatccaataatgttggaaacttaacttcatatatcaacagGCGTTGCAGGACAGCAGCGCAAGACGCAAGAAACTGAACATGCTCAAATATGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA