1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttttaacattattagaaaatgcagtttgtctgttagaatgtgtttatagctgttttaaatttccaatttaagcaaaactcgtgttcatccttcttggcagGTCTATGGAAATAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAG
species | Glycine max |
transcript | GLYMA12G09700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTATAACTGAAGGCTTCACATCTTACTGCAAGAGAAAGAGAAGAGACAAG GTCTATGGAAATAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGTEST: gi|193690338|gb|FK629245.1|FK629245
genomic: TTATAACTGAAGGCTTCACATCTTACTGCAAGAGAAAGAGAAGAGACAAGgtatgtgaca ... ttcttggcagGTCTATGGAAATAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGT
EST: TTATAACTGAAGGCTTCACATCTTACTGCAAGAGAAAGAGAAGAGACAAG GTCTATGGAAATAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGT
genomic: TTATAACTGAAGGCTTCACATCTTACTGCAAGAGAAAGAGAAGAGACAAGgtatgtgaca ... ttcttggcagGTCTATGGAAATAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGT
atagctgttttaaatttccaatttaagcaaaactcgtgttcatccttcttggcagGTCTATGGAAATAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAG
tgttcatccttctt CT-rich tract
tgttttaaatttccaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaacattattagaaaatgcagtttgtctgttagaatgtgtttatagctgttttaaatttccaatttaagcaaaactcgtgttcatccttcttggcagGTCTATGGAAATAATGTTGAGATCCAAGCCATGTGTGAAATGTATAATCGTCCAATTCACATATACTCCTACACCACAG
- - - - - - - - - -tgcagtt
- - - - - - - - - - - - - -gtctgtt
- - - - - - - - - - - - - - - - - -gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtgttc