1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtaacttgtttgctagaaattgttctcccattgtgtatgaattttgcctgtctatcagtatcggctttgaacttaatggtaactatatactctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTAGTAGCTCAGGACATGCTGGAACAACAGCCGACAGAGTTTCAACTGACA
species | Glycine max |
transcript | GLYMA12G09600.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|16346323|gb|BI971918.1|BI971918
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|151398999|gb|EV268870.1|EV268870
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAGGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|192326512|gb|FK018819.1|FK018819
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|5126760|gb|AI748496.1|AI748496
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|10253437|gb|BE821203.1|BE821203
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|192301404|gb|FG998396.1|FG998396
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTC-GGGGGTTCAGTAACTGATGCCAAACCTEST: gi|151411066|gb|EV280877.1|EV280877
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAGGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|151411525|gb|EV281336.1|EV281336
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|151412650|gb|EV282462.1|EV282462
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|33390403|gb|CA853598.1|CA853598
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|31471738|gb|CD413766.1|CD413766
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTEST: gi|31468078|gb|CD410106.1|CD410106
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
EST: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAG GGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
genomic: AAAGCTGAGCAAGAGAAGTTGGAGAAGCTTGCTCGCAAGgtatgttctt ... tctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCT
gcctgtctatcagtatcggctttgaacttaatggtaactatatactctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTAGTAGCTCAGGACATGCTGGAACAACAGCCGACAGAGTTTCAACTGACA
tatatactctaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacttgtttgctagaaattgttctcccattgtgtatgaattttgcctgtctatcagtatcggctttgaacttaatggtaactatatactctaatttagGGTCCTCAACCCGAAGCAGGCTCGGGGGGTTCAGTAACTGATGCCAAACCTAGTAGCTCAGGACATGCTGGAACAACAGCCGACAGAGTTTCAACTGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - tgtttgc
- - - - - - - - - - - ttctccc
- - - - - - - - - - - - - - - - -tgtatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggctttg