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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattatgttgatcacagtatatattgctttcctgcataaggttcatctcttgagcattgctcttatcatttttttgggttctattgcagCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTTAT

Basic information

species Glycine max
transcript GLYMA12G09540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G09540.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os05g37120.2 (Oryza sativa), 3'ss of exon 3
-gtattatgttgatcac----agtata------tattgctttcctgcataaggttcatctcttgagcattgctcttatcattttt---ttgggttctatt-------gcagCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTTAT
  || | | |||| |||    |   ||      |||||  | |||| |    |         |||| ||   |  | |   |  |   |||| || |  |        |||||||   ||| || || || |||||||||   || ||||| |||||  | ||| |||||||||| ||||||||||| || ||||| ||||||||||| ||
gttactgttttgaacacttgaaacttactgaattattggctgcctgaactgtgaattgtcagtgagtataatttatgttgctcctcagttggctttttctctgtgcaacagCTCTGATTCCAGGCTCCCTGTTTGGGCTTATGACGTTCAGTCACAAGATTGGACTGTATGATGTACAAGGTCCAATTCCAGTTGTAAAAAATGTTTTCAT

upper sequence: GLYMA12G09540.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G106140_T01 (Zea mays), 3'ss of exon 3
gtattatgttgatcacagtatatattgcttt---cctgcataaggttcatctcttgagcatt-gctcttatcattttt---ttgggttct------attgcagCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTTAT
|||| |  ||    ||  | |   ||  |||      |   || |    ||  |||   |||   | | | | || ||   ||||||| |          ||||||||  ||| || ||  | |||||||||   ||||||||||||||  | || ||||||||||| |||||||| || ||  |||||||||||||||||||
gtatgaaattctgaactttctgatttttttttggttcgtccaatgactgtcatttgtcaattcagtttgacccttcttcgtttgggttttcaccatgcaacagCTCTTATTCCGGGCTCCTTATTTGGGCTTATGACATTCAGCCACAAGATTGGGTTGTATGATGTCCAAGGTCCGATTCCACTTGTGAAAAATGTTTTTAT

upper sequence: GLYMA12G09540.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G095810_T01 (Zea mays), 3'ss of exon 3
---gtattatgttgatcacagtatatattgctttcctgcataaggttca----tctcttga-gcattgctcttatcatttttttgggttctattgcagCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTTAT
      | | ||   |   ||   || ||   ||   ||||||   |      |||| | | ||      |  |  | | |||||   | || ||||||||||   || || ||||| ||||| |||   ||||| |||  |||| |||||||||||||||| ||||||||||||||  | ||||| ||||| |||||
gtgacctcaagtcc-ttggagctaatcttttgttaaagcataatactgggagttctcataaagctacatacaaactaatcttttga--tgtaatgcagCTCTTTTGCCAGGATCACTATTTGGACTTTTGACATTTAGCAGCAAAATAGGATTGTATGATGTCCAAGGTCCAATACCAATCGTGAAGAATGTGTTTAT

upper sequence: GLYMA12G09540.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G27460.1 (Arabidopsis thaliana), 3'ss of exon 3
---gtattatgttga--tcacagtatatattg--ctttcctgcataaggttcatctcttgagcattgctcttatcatttttttgggttctattgcagCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTTAT
   || | ||    |  | | || |   |||    ||| || |     |    | || |||| |   |  || ||   |||||  ||     |||||||||   ||| ||  | |||||||| |||| ||| ||||| |||||| ||||| |||||||||||||||| || ||||| ||||| || ||||| || ||
gtcgtttcataccaaatttaaagcaaggatttactttttcttctgtgtgactgtgtcctgaggaaaacaattctctcgttttttcgtata--tgcagCTCTAAGTCCAGGGGCTCTTTTTGGTCTTGTTACGTTCAGTCACAAAATAGGACTGTATGATGTTCAAGGACCTATACCAGTTGTAAAGAATGTATTCAT

upper sequence: GLYMA12G09540.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0080g00510.t01 (Vitis vinifera), 3'ss of exon 3
--------gtattatgttgatcacagtatatattgctttcctgcataaggttcatctcttgagcattgctcttatcatttttttgggttctattgcagCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTTAT
         |  ||| || |      | |   || ||||| |||| || |||    | | ||  | |   |||    |||| ||   ||||  | ||||||| |  |||||  |||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||| ||  |||| ||||| || ||||||||  |
gtagtttatttatatattaagatggttctcagtttctttcatgcacaaagtttccatttcgaaaacttaactt----ttttcttttattct--tacagCTCTCGGGCCTGGAGCACTGTTTGGGCTTGCTACATTTAGCCACAAAATAGGGTTGTATGATGTTCAAGGGCCTGTACCAGTTGTAAAGAATGTTTTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaggttcatctcttgagcattgctcttatcatttttttgggttctattgcagCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACATTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTTAT
                                            ttctatt  CT-rich tract
                          tcttatcattttttt  TA-rich tract