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...ttggactccatggattatttcctttttaatcctaaatttaatatgctgtctttcagtttttggatgatacactgatgctgtgttttgtctttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
species | Glycine max |
transcript | GLYMA12G07590.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG GATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGEST: gi|120532141|gb|EH260274.1|EH260274
genomic: CTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGgtgagataat ... ttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
EST: TCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG GATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGEST: gi|209727434|gb|BW663720.1|BW663720
genomic: TCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGgtgagataat ... ttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
EST: TCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG GATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGEST: gi|209696512|gb|BW666889.1|BW666889
genomic: TCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGgtgagataat ... ttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
EST: TCAAAGATGTGCTCACTCAGTTACACCCCTCAAAGCAGGGAAAGAAGCAG GATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAGEST: gi|209719159|gb|BW679752.1|BW679752
genomic: TCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGgtgagataat ... ttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
EST: TCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAG GATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
genomic: TCAAAGATGTGCTCACTCAGTTACACCTTTCAAAGCAGGGAAAGAAGCAGgtgagataat ... ttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
ctgtctttcagtttttggatgatacactgatgctgtgttttgtctttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
cactgat putative branch site (score: 3)
tgttttgtcttttttt putative PPT
ttttgtcttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggactccatggattatttcctttttaatcctaaatttaatatgctgtctttcagtttttggatgatacactgatgctgtgttttgtctttttttgtagGATCTTGTTGATCGCATATTATCTGTTCTCTCAGATGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -ccatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttttg