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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcatatattctcttgaaatgccaacttttgcaagactagaaattatagaacttgatgttgtgcataattttttgtatggtctctttacttttgtttagGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAGCATAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGATCCAGAGTCCA

Basic information

species Glycine max
transcript GLYMA12G07470.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07470.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0085g00020.t01 (Vitis vinifera), 3'ss of exon 3
---tttcatatattctcttgaaatgccaacttttgcaagactagaaattatagaacttgatgttgtgcataattttttgtatggtctctttacttttgtttagGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAGCATAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGATCCAGAGTCCA
      |     | | ||| |  |  |    ||| |   | | | |   ||  || |   ||||  |||||  |  |   |       | |  | |||| ||||||||||||||  ||||||| |||||||| ||  ||||||||||||||||||  ||||| ||||| ||||| |  ||  ||||| ||||||||||  | |
gtggggcggggttacacttcactttgctttcttttctgcagttggacacatgaaattc--tgtttagcatagctcataaaaaaagtggtgt-ttcttgtctagGCTGAGGTAAAACAAGATCTCACAGCTGAAGAAACATTTGAAAGTAAGAAGCGCAAACTAGCAGAGTTGGGAATGGCACTGCTTGCAGATCCAGAAGCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209714295|gb|BW665570.1|BW665570
EST:     AAGAGGTGGCTAAAGCAGAAGTGGAAGAGACACCACAAGCAGCAGTATTG                         GCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAG
genomic: AAGAGGTGGCTAAAGCAGAAGTGGAAGAGACACCACAAGCAGCAGTATTGgtattatcaa ... ttttgtttagGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatagaacttgatgttgtgcataattttttgtatggtctctttacttttgtttagGCTGAGGTAAAGGAAGATCTTACAGCTGAGGAGGCATTTGAAAGTAAGAAGCATAAACTTGCAGAATTGGGGAATGCCTTGCTTACAGATCCAGAGTCCA
      acttgat  putative branch site (score: 5)
                                    tctctttacttttgtt  putative PPT
                    ataattttttgtat  TA-rich tract