Sequence
atgc intronic sequence ATGC exonic sequence...tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatcttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
Basic information
species | Glycine max |
transcript | GLYMA12G07340.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 3'ss of exon 3
tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttt-tccctcagaacttagaaat-cttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
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---------gtaagtgacttctggtgcctgtctctcagattattgcttctttgaatatcccatggcgtgtctataccaattttgttgttttttgatatttagGATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTG
upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 3
tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatctta-ttgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
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----------------gtatgcg---acttcttgtgctcatgtcgaatgtgctttgccgaatggtgttcttatactagcttgtttcttatttgatttctagGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTG
upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 3
-----tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatcttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
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tgttttaggggaacaattgttgcgttagatgtagaatttgttatttgttaaacattttctctacattga--taaaaat-ttattg--ttttctgaatgctgtcagGATGAAAATGGGAATAAGACGATCAATGAGTATGTTCGTGAGTACAAGATTGGTTCTGGAAGCTATGGCAAAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208094328|gb|GD891589.1|GD891589EST: TTTGTAGGCAGTTTCCAGTTAAGGAAACTCGCAAACTTGTTCGCAGCGAG GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATT
genomic: TTTGTAGGCAGTTTCCAGTTAAGGAAACTCGCAAACTTGTTCGCAGCGAGgtaattgatt ... ttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatatcttttccctcagaacttagaaatcttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
cttttattttcctttt CT-rich tract
ttagaaatcttattga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatcttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
- - ggaatgt
- - - - - - - -tgtattc
- - - - - - - - - - - - gaaacac