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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatcttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG

Basic information

species Glycine max
transcript GLYMA12G07340.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G60550.1 (Arabidopsis thaliana), 3'ss of exon 3
tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttt-tccctcagaacttagaaat-cttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
         || | |    |   |        ||||    |||||  | | |   |  | ||   | |    || |  |||    | || |||    ||||||||||||||||  ||||||  || ||||||||| |||| | || ||| ||||| || ||||||||||| ||||||
---------gtaagtgacttctggtgcctgtctctcagattattgcttctttgaatatcccatggcgtgtctataccaattttgttgttttttgatatttagGATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTG

upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 3
lower sequence: AT3G45240.3 (Arabidopsis thaliana), 3'ss of exon 3
tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatctta-ttgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
                |||| |    |   ||| |  |  | | |||| |  ||| ||  |     |    ||  ||  |    | ||||||   || ||||||||| |||| |||||||  |||||||||| | ||||||||  ||| ||||| |||||||| ||||||||||||
----------------gtatgcg---acttcttgtgctcatgtcgaatgtgctttgccgaatggtgttcttatactagcttgtttcttatttgatttctagGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTG

upper sequence: GLYMA12G07340.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g02990.t01 (Vitis vinifera), 3'ss of exon 3
-----tattggaatgttatttgtattcaggaaacacttctctttgtattgaatatcttttccctcagaacttagaaatcttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
     ||  ||||   |  |||  ||      | | ||   | | | || || || || ||       |  || |||| ||||||   |||     | || | |||||||||||||||| |||| ||| ||||||||| |||||||||| |||||||||||||| |||||||| ||||||
tgttttaggggaacaattgttgcgttagatgtagaatttgttatttgttaaacattttctctacattga--taaaaat-ttattg--ttttctgaatgctgtcagGATGAAAATGGGAATAAGACGATCAATGAGTATGTTCGTGAGTACAAGATTGGTTCTGGAAGCTATGGCAAAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208094328|gb|GD891589.1|GD891589
EST:     TTTGTAGGCAGTTTCCAGTTAAGGAAACTCGCAAACTTGTTCGCAGCGAG                         GATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATT
genomic: TTTGTAGGCAGTTTCCAGTTAAGGAAACTCGCAAACTTGTTCGCAGCGAGgtaattgatt ... ttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatatcttttccctcagaacttagaaatcttattgaacttttattttccttttagGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGGAAAGTG
                                     cttttattttcctttt  CT-rich tract
                    ttagaaatcttattga  TA-rich tract