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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcatgattgttcctattttatcattgtagttttgtctattctatatgtttcttacttttttaaagaaacggaaaattaaactatgaaattttattgacagACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAG

Basic information

species Glycine max
transcript GLYMA12G07300.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G07300.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g02940.t01 (Vitis vinifera), 3'ss of exon 3
--------------------------gttagtcatgattgttcctattttatcattgtagttttgtctattctatatgtttcttacttttttaaagaaacggaaaattaaactatgaaattttattgacagACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAG
                           || || || ||  || || |  | |  |  || | |    ||||  || |   || |  | |   |    |||      | | |  |   |||||  ||  |||||| |||||||||||||||||||||||||||| ||||| || || |||||||||||||| |||||||| ||||
gttagtgacacctgtccttgttttctattggttatcataatttctgtactctgttgctactataacatatttcat-taaatcatgatgtccgatgagaacaattgttaagagcaattaatttatttttcagACTCGAAATGCTCGTAAAGCTTGTCCAAATGGTGTTTCACTACCAGAATGGATTCTCAAATCTAGGGAGATAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttcttacttttttaaagaaacggaaaattaaactatgaaattttattgacagACTAGAAATGCTCGTAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAATGGATTCTCAAGTCTAGGGAAATAG
   ttcttac  putative branch site (score: 2)
                                           ttttatt  putative PPT
                          aaaattaaactatgaa  TA-rich tract