1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtctgttccttttacttctccctcctttccctttgaaaaaaaaagtagacattctgttttttttctttttaagtcagaaacttagatatatttcaccctatctctgcagATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGCTTCCTTTGGTTACAATTTTTACAAGAGAAAGTGCCCCGGTAATCTTTGA
species | Glycine max |
transcript | GLYMA12G07260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCTGCTTTGATCTTGCTCAAGAAAGAGGAAGAGAAATTGAACCATTTTG ATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGCEST: gi|42722722|gb|CK768621.1|CK768621
genomic: CCCTGCTTTGATCTTGCTCAAGAAAGAGGAAGAGAAATTGAACCATTTTGgtctgttcct ... atctctgcagATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGC
EST: CCCTGCTTTGATCTTGCTCAAGAAAGAGGAAGAGAAATTGAACCATTTTG ATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTEST: gi|27423459|gb|CA934979.1|CA934979
genomic: CCCTGCTTTGATCTTGCTCAAGAAAGAGGAAGAGAAATTGAACCATTTTGgtctgttcct ... atctctgcagATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTT
EST: CCCTGCTTTGATCTTGCTCAAGAAAGAGGAAGAGAAATTGAACCATTTTG ATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGC
genomic: CCCTGCTTTGATCTTGCTCAAGAAAGAGGAAGAGAAATTGAACCATTTTGgtctgttcct ... atctctgcagATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGC
tgttttttttctttttaagtcagaaacttagatatatttcaccctatctctgcagATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGCTTCCTTTGGTTACAATTTTTACAAGAGAAAGTGCCCCGGTAATCTTTGA
tttcaccctatctct CT-rich tract
aaacttagatatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgttccttttacttctccctcctttccctttgaaaaaaaaagtagacattctgttttttttctttttaagtcagaaacttagatatatttcaccctatctctgcagATGGCCAATTTGTAAAAGCTGAAATAGCCGATTTTGTAACCTCCAACAAGCTTCCTTTGGTTACAATTTTTACAAGAGAAAGTGCCCCGGTAATCTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA