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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaattaatcgtaaatataactcttctttataagtagaaaatatataggggcaagaatttgtgcagaagaatatttatattcctatgtgcctgactttcagGTTCCAGCTATATAGTTTACGGTACTAG

Basic information

species Glycine max
transcript GLYMA12G07250.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193357858|gb|FK321054.1|FK321054
EST:     TTGGATCAGACATTTGGACCTTTGATAAAGTCTCTCAGCTCACGTGGATG                         GTTCCAGCTATATAGT
genomic: T-GGATCAGACATTTGGACCTTTGATAAAGTCTCTCAGCTCACGTGGATGgtagaaattt ... tgactttcagGTTCCAGCTATATAGT
EST: gi|208319162|gb|GE113323.1|GE113323
EST:     GTGGATCAGACATTTGGACCTTTGATAAAGTCTCTCAGCTCACGTGGATG                         GTTCCAGCTATATAGTTTACGGTACTAG
genomic: GTGGATCAGACATTTGGACCTTTGATAAAGTCTCTCAGCTCACGTGGATGgtagaaattt ... tgactttcagGTTCCAGCTATATAGTTTACGGTACTAG
EST: gi|208297438|gb|GE090553.1|GE090553
EST:     GTGGATCAGACATTTGGACCTTTGATAAAGTCTCTCAGCTCACGTGGATG                         GTTCCAGCTATATAGTTTACGGTACT
genomic: GTGGATCAGACATTTGGACCTTTGATAAAGTCTCTCAGCTCACGTGGATGgtagaaattt ... tgactttcagGTTCCAGCTATATAGTTTACGGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggggcaagaatttgtgcagaagaatatttatattcctatgtgcctgactttcagGTTCCAGCTATATAGTTTACGGTACTAG
                                          gcctgac  putative branch site (score: 3)
                                                ctttc  CT-rich tract
                  agaagaatatttatat  TA-rich tract