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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagggatgttgttggttattaagcattcagtttgatgtcgagtaaatattgattttgttgtacgttaaaacaaaagcattgttctttctaaactattcattttgttgccctctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCACTGGCAG

Basic information

species Glycine max
transcript GLYMA12G06920.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533265|gb|EH261398.1|EH261398
EST:     ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAA                         GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
genomic: ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAAgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
EST: gi|120533673|gb|EH261806.1|EH261806
EST:     ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAA                         GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
genomic: ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAAgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
EST: gi|120533657|gb|EH261790.1|EH261790
EST:     ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAA                         GAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC
genomic: ATCTTCAACCAAAAATTAAGGCCATTCAAGATAGATATGCTGGCAATCAAgtgagggatg ... tctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaacaaaagcattgttctttctaaactattcattttgttgccctctttttaagGAAAGAATACAACTTGAGACGTCAAGGCTATATCGGCAGGCTGGGGTTAACCCACTGGCAG
                    ttctaaa  putative branch site (score: 2)
 ttcattttgttgccct  putative PPT
 taaactattcatttt  TA-rich tract