1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctatatcttcctaatctaactagaagtagtagagctgatttctctgaggttgtctaacttgtcttgtttccttcatgcttgttgaattaatttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACG
species | Glycine max |
transcript | GLYMA12G06820.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGTACAACTG GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGEST: gi|27423623|gb|CA935143.1|CA935143
genomic: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
EST: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTG GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGEST: gi|120533483|gb|EH261616.1|EH261616
genomic: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
EST: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTG GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGEST: gi|6916053|gb|AW397583.1|AW397583
genomic: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
EST: GTTNGCCATCCAG-CTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTG GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCTCATTTACG
genomic: GTT-GCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
tgaggttgtctaacttgtcttgtttccttcatgcttgttgaattaatttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACG
ttgttgaattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctatatcttcctaatctaactagaagtagtagagctgatttctctgaggttgtctaacttgtcttgtttccttcatgcttgttgaattaatttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACG
- - - -cttccta
- - - - - - - - - - - - - - - - - gctgatt
- - - - - - - - - - - - - - - - - - - - - - - gaggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt