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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctatatcttcctaatctaactagaagtagtagagctgatttctctgaggttgtctaacttgtcttgtttccttcatgcttgttgaattaatttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACG

Basic information

species Glycine max
transcript GLYMA12G06820.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G06820.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0004g04570.t01 (Vitis vinifera), 3'ss of exon 3
-tctatatcttcctaatctaactagaagtagtagagctgatttctctgaggttgtctaact-tgtcttgtttccttcatgcttgttgaattaatttgt-gcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACG
    |||   |  | |||| | |     |   |   ||  ||      | |   | |   | ||    || ||  |  |||    ||   |||||  | |||||||| ||||| |||||||||||||||||||| || ||||||||||| || ||||| |||||||| || ||||| ||||| ||||||||| | || || ||
aagaataatgttttgatcttaatcttt-tcacatcactagttcacaaaaaggaatgtttttgtgcaaagtctctatggtgccatctgg--taattcattgcagGTATTGTTCTGGACTCTGGAGATGGTGTCAGTCACACTGTCCCCATCTATGAGGGATATGCTCTTCCACATGCTATCCTACGTCTTGACCTGGCTGGTCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533483|gb|EH261616.1|EH261616
EST:     TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTG                         GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
genomic: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
EST: gi|27423623|gb|CA935143.1|CA935143
EST:     TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTG                         GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
genomic: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
EST: gi|209705758|gb|BW661426.1|BW661426
EST:     TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGTACAACTG                         GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
genomic: TGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG
EST: gi|6916053|gb|AW397583.1|AW397583
EST:     GTTNGCCATCCAG-CTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTG                         GTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCTCATTTACG
genomic: GTT-GCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGCACAACTGgttagtcatt ... atttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaggttgtctaacttgtcttgtttccttcatgcttgttgaattaatttgtgcagGTATCGTTCTAGACTCTGGAGATGGTGTCAGCCATACTGTCCCCATTTACGAGGGGTATGCTCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGACG
                                  ttgttgaattaattt  TA-rich tract