1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taattaatatctaacagaactatctgagatttggaaccctctctctccaccttttcctctactagttagagtttctctaatacctatgtttcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGCTGCCTACCATGAAGCAGGCCATGCTGTTTCAGGTTGGTTCTTGGAACATGGTGAGCCCTTGTTGAAAGTAA
species | Glycine max |
transcript | GLYMA12G06580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCATEST: gi|207794791|gb|GD764878.1|GD764878
genomic: TTGAGGCGGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGCTGCCTACCATGAAGCAGGCCAT
EST: GAGGCAGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAG GTAATAAGCAAGCTGGAAAGGCGGACTGTTGCCTACCATGAAGCAGGCCAT
genomic: GAGGCGGCCATTGATAGGATCATTGGTGGTTTGGAAAAGAGGAACAAGgtatgtcttt ... tcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGCTGCCTACCATGAAGCAGGCCAT
tccaccttttcctctactagttagagtttctctaatacctatgtttcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGCTGCCTACCATGAAGCAGGCCATGCTGTTTCAGGTTGGTTCTTGGAACATGGTGAGCCCTTGTTGAAAGTAA
ctctaat putative branch site (score: 3)
tgtttctt putative PPT
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattaatatctaacagaactatctgagatttggaaccctctctctccaccttttcctctactagttagagtttctctaatacctatgtttcttaaccagGTAATAAGCAAGCTGGAAAGGCGGACTGCTGCCTACCATGAAGCAGGCCATGCTGTTTCAGGTTGGTTCTTGGAACATGGTGAGCCCTTGTTGAAAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - -ctatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctatgt