1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atggttgtttttcaagaattagtcatatgcctgcattccagtttatcaaaaggggtaccactaacaacttttgatgactggattctccttttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTCAAAATCTAGTCACCCCATTATTGTTGATGGGGCTATT
species | Glycine max |
transcript | GLYMA12G06530.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAG ATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCAEST: gi|208068314|gb|GD866612.1|GD866612
genomic: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAGgtaaaagaag ... ttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCA
EST: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAG ATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCAEST: gi|208305313|gb|GE105324.1|GE105324
genomic: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAGgtaaaagaag ... ttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCA
EST: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAG ATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCAEST: gi|163923237|gb|EH039651.1|EH039651
genomic: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAGgtaaaagaag ... ttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCA
EST: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAG ATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCAEST: gi|209707156|gb|BW656773.1|BW656773
genomic: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAGgtaaaagaag ... ttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCA
EST: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAG ATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCA
genomic: GGAAAAGAAGGAAGTTCCGAAAGGAAACGACAAAAAATACGAGTCCAAAGgtaaaagaag ... ttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCA
tcaaaaggggtaccactaacaacttttgatgactggattctccttttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTCAAAATCTAGTCACCCCATTATTGTTGATGGGGCTATT
ttctccttttaacttc CT-rich tract
ttttaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atggttgtttttcaagaattagtcatatgcctgcattccagtttatcaaaaggggtaccactaacaacttttgatgactggattctccttttaacttcagATAACTCGAACGCAAACACAGAGGATAGTGGAAATTTTCAGGAAGCTTTCATGAAGCAAGTTCAAAATCTAGTCACCCCATTATTGTTGATGGGGCTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- ggttgtt
- - - - - - - - - - - - -tatgcct
- - - - - - - - - - - - - - - - gcattcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgac