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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattaaacttcaaattaattacttttagagttttattctcttttttctttgaagttgtttaggtaatattattaattgtgagttttattaacacatttctcttaatgttttgcttatgtacatatttcttctcaactttccttcagTTTATTTGG

Basic information

species Glycine max
transcript GLYMA12G06010.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26045627|gb|CA783156.1|CA783156
EST:     TTGGGATAATAGCTGTAGAAGGGAAGGCCAATCAAGAAAAGGACGCCAAG                         TTTATTTGG
genomic: TTGGGATAATAGCTGTAGAAGGGAAGGCCAATCAAGAAAAGGACGCCAAGgtgattaaac ... tttccttcagTTTATTTGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatttctcttaatgttttgcttatgtacatatttcttctcaactttccttcagTTTATTTGG
        tcttaat  putative branch site (score: 3)
                               tatttcttctcaactt  putative PPT
                      ttatgtacatattt  TA-rich tract