Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatatttatatcttctgtcgaagtttgttctatttttaattaatattataaatgtgttgtcagaaaatgtaaagagaagatatgaagtgaggttactttgatttattcgtaacatttcttcgtcttacagGTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTATTTGAGTGATGGTGATAACTGGATGTTCGCAGGCCATGAAGTGCATATAT

Basic information

species Glycine max
transcript GLYMA12G05470.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05470.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0102g01180.t01 (Vitis vinifera), 3'ss of exon 5
gtatgatatttatatcttctgtcgaagtttgttctatttttaattaatattataaatgtgttgtcagaaaatgtaaagagaagatatgaagtgaggttactttgatttattcgtaacatttcttcgtcttacagGTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTATTTGAGTGATGGTGATAACTGGATGTTCGCAGGCCATGAAGTGCATATAT
                || ||  | ||||  || |     |  |||  |||         || |  |||| ||||||   | | | |   |||| |||   ||    | || ||    ||       |||  ||||||||||||| | ||||||||||||  |||||||||| ||||||||   |||||  ||||| || || |||||||| ||||||||||| |||  | || 
---------------tttgtgaagcagttcattttgcccatgcttatgatt---------ttttttgaaattgtaaacttatgcttttttgtgaagtt---ttaccctttttgtgggttt-------cttgtagGTAATTGGTTCTGGAATAGACAAGGATCGAATTCCTGGAATTGATATAGTTTTGAAAGATGGAGACAAGTGGATGTTTGCAGGCCATGAGGTGGTTGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18710446|gb|BM522497.1|BM522497
EST:     CTGATCACACTGGTGGAAATGCAGAGTTGAAAGAAAGGTATGGGGCAAAG                         GTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTAT
genomic: CTGATCACACTGGTGGAAATGCAGAGTTGAAAGAAAGGTATGGGGCAAAGgtatgatatt ... cgtcttacagGTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTAT
EST: gi|15285766|gb|BI469657.1|BI469657
EST:     CTGATCACACTGGTGGAAATGCAGAGTTGAAAGAAAGGTATGGGGCAAAG                         GTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTAT
genomic: CTGATCACACTGGTGGAAATGCAGAGTTGAAAGAAAGGTATGGGGCAAAGgtatgatatt ... cgtcttacagGTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagatatgaagtgaggttactttgatttattcgtaacatttcttcgtcttacagGTAATTGGTTCAGAAATAGACAAGGAAAGAATTCCTGGTATTGATATCTATTTGAGTGATGGTGATAACTGGATGTTCGCAGGCCATGAAGTGCATATAT
                               tcgtaac  putative branch site (score: 2)
                                     catttcttcgtctt  CT-rich tract
                 ttactttgatttatt  TA-rich tract