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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacccatcttgctctatttaagatactatgtattgggaaatatgtatgcaattaatctaactcgttctttttatataacaagGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGGAG

Basic information

species Glycine max
transcript GLYMA12G05140.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G05140.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G104847_T01 (Zea mays), 3'ss of exon 3
-------------gtaacccatcttgctctatttaagatactatgtattgggaaata---tgtatgcaattaat-----ctaactcgttctttttatataacaagGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGGAG
             ||      ||    ||| | || | |  ||  |||| | |  |     ||    |||||||     |||||| ||    | |  ||    ||||||  |  |||||||||||||| ||||||||||| |||||| | || || ||| ||
gtgagtgaagaacgtttgatgtccctgtctgtctatgttgttaattatttgtatgttcatcgtgaagaattaatggcaactaacttgtcaagtgtcgatggacagGGAGCTCACTGTGGCATATATGGATCCAACTGCCCGGAATGGGTTATGGCCATGCAG

upper sequence: GLYMA12G05140.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0063g01880.t01 (Vitis vinifera), 3'ss of exon 3
-----------------------------gtaacccatcttgctctatttaagatactatgta--ttgggaaatatgtatgcaattaatctaactcgttctttttatataacaagGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGGAG
                             || |    | |   | |    | ||    ||| |  ||  |||| |   | |   || |     || | | ||||| | |  || ||||||| | ||||| || ||||| |||||||||||||||||||||||||| ||||||
gtaagcacgacttccactgaaatggtttagttagggttttcattttgcaaatgagttgatgaaatttcagaaagagtgaggtttttgagtc--ctgggtttttttgtttctca-gGGAGACAGGTGTGGGATTTATGGATCCAACTGCCCCGAATGGATAATTGCTATGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtattgggaaatatgtatgcaattaatctaactcgttctttttatataacaagGGAGACCGTTGTGGCATATATGGGTCCAACTGCCCCGAATGGATAATTGCAATGGAG
                           atctaac  putative branch site (score: 2)
                                 ctcgttctttttat  CT-rich tract
                                     ttctttttatataaca  TA-rich tract