1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtcaagaggtttttctttgtcttttctatttcatagatatttgtggttgtttatagaatggctttgcagaattatattagagttgttacgaatcccttttcaataatttgttcttgttgtaatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCC
species | Glycine max |
transcript | GLYMA12G04820.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTTCGEST: gi|209696738|gb|BW660435.1|BW660435
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCT-CG
EST: TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGEST: gi|209720618|gb|BW677326.1|BW677326
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGEST: gi|209703331|gb|BW683311.1|BW683311
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGEST: gi|193609379|gb|FK561207.1|FK561207
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: TTATCACAAAACTTTTATACCTACTGAATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGEST: gi|193411617|gb|FK378598.1|FK378598
genomic: TTATCACAAAACTTTTATATCTACTGAATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
EST: AATCAGGGAGAGACATTTACAAAG ACCGAAGCCACAGAAGTTTTCTTTTCTGTGACTAAGCTTTTCCAGTCTCGA
genomic: AATCAGGGAGAGACATTTACAAAGgtcaagaggt ... aatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGG
attagagttgttacgaatcccttttcaataatttgttcttgttgtaatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCC
ttttcaataatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaagaggtttttctttgtcttttctatttcatagatatttgtggttgtttatagaatggctttgcagaattatattagagttgttacgaatcccttttcaataatttgttcttgttgtaatttcatagACCGAAGCCACAGAAGTTTTCTTTTCTGTAACTAAGCTTTTCCAGTCTCGGGATCTTGGGTTAAGGAGAATGGTCTACCTGATCATAAAGGAGCTCTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT