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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctagctttaattaaaattttgattgttttgatgaattttgtgtttgtgtggattgtagaactaacatatccggtatgtgttgctagTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGTATTGGGGTGTGTATCCTGCATTGTGGGATCAATTGTTATTGTCATCCAT

Basic information

species Glycine max
transcript GLYMA12G03390.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G03390.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0038g01940.t01 (Vitis vinifera), 3'ss of exon 3
--------------------gtactctagctttaattaaaattttgattgttttgatgaattttgtgtttgtgtgg-attgtagaactaacatatccggtatgtgttgctagTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGTATTGGGGTGTGTATCCTGCATTGTGGGATCAATTGTTATTGTCATCCAT
                        ||| | ||    |||| | || |       |  ||||||| | ||| | |   ||| |||||||||||| |  | ||| |||   ||||||  ||||| | || ||| |||||||||||||||| | ||| ||||| ||  |||| ||||| || ||||||||||||||| | || ||||| ||||||
gtaataatgcaggtgcttcaaaggtcttgtttgtgctaaattattaaaataaaagtggaattttctttttctcttttattttagaactaacatgtttgatatatgtgaatagTGCCATTTTGGCGCATTTCATGTTGAAGGAACGGCTACAGAAAATGGGTGTTCTGGGATGTGTTTCATGCATTGTGGGATCAGTAGTGATTGTAATCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5606385|gb|AI900539.1|AI900539
EST:     GCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAG                         TGCTGTTTTGTCTCACTCCTTGCTGAAGGAACGGCTTCCGAAGATGGGGGT
genomic: GCTCCGGCAGTTCTGGTTACTCCCCTTGGTGCACTTAGTATTATTGTCAGgtactctagc ... gtgttgctagTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaattttgtgtttgtgtggattgtagaactaacatatccggtatgtgttgctagTGCTGTTTTGTCTCACTTCTTGTTGAAGGAACGGCTTCCGAAGATGGGGGTATTGGGGTGTGTATCCTGCATTGTGGGATCAATTGTTATTGTCATCCAT
                           aactaac  putative branch site (score: 1)
                              taacatat  TA-rich tract