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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatttttctaacctgcacacaactttgtcaatgcaatgctattatttgttggaattggcattgagtggtctttttcttctttcagGTACAAGCCTGGACAGGTTTATCTAGAGAAAGACCTGATTCTCCCTTATGTTCCCAATGTTGATTTATGTGATGCCAAGTGTTTATCTGAGACGAATCCA

Basic information

species Glycine max
transcript GLYMA12G02010.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G02010.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G16890.1 (Arabidopsis thaliana), 3'ss of exon 3
gttatttttctaacctgcacacaactttgtcaatgcaatgctattatttgttggaattg-gcattgagtggtcttttt---ctt---ctttcagGTACAAGCCTGGACAGGTTTATCTAGAGAAAGACCTGATTCTCCCTTATGTTCCCAATGTTGATTTATGTGATGCCAAGTGTTTATCTGAGACGAATCCA
|| | |||      ||    | ||||   |  | |  |||  ||    | |   |  |   | ||   |  ||| |||   |||   ||   ||||| |||||||| || ||||   | ||||||||||| ||||| ||||||||||||||||||||| | |||||| |||| || || || || |     |||
gtgagtttagatttctttctataactgatttcaagtcatgtaatctgctctcttagctatacgttttttattctgtttgaacttgacctcgtagGTATAAGCCTGGGCAAGTTTCATTGGAGAAAGACCTAATTCTTCCTTATGTTCCCAATGTTGATATCTGTGATACCAAATGCTTGTCAGAAAGTGCACCA

upper sequence: GLYMA12G02010.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv19s0014g00560.t01 (Vitis vinifera), 3'ss of exon 3
gttatttttctaacctgcacacaactttgtc--aatgcaatgctattatttgttggaattggcattgag--tggtctttttcttctttcagGTACAAGCCTGGACAGGTTTATCTAGAGAAAGACCTGATTCTCCCTTATGTTCCCAATGTTGATTTATGTGATGCCAAGTGTTTATCTGAGACGAATCCA
|| | |  | || |    ||     | ||||  |||   |||   | |||  |||  ||      |||   | |    ||| ||  || ||||||||||||||||| ||||  || || ||||| || || || ||||||||||| ||||| ||||| ||||||||||| || | ||| || |   |  ||
gtcactaattta-ctcatactgtgatgtgtctaaatttgatgagttcatt-attgatataactgctgaaacttgatcattttttaatttagGTACAAGCCTGGACAAGTTTCACTTGAAAAAGATCTAATACTTCCTTATGTTCCAAATGTCGATTTGTGTGATGCCAAATGCTCATCGGAAAGTGAATCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10232714|gb|BE801602.1|BE801602
EST:     GTGAAGAATGCAATATGGCTCTTGCCTGATATGGATTCCACAGGGAACTG                         GTACAAGCCTGGACAGGTTTATCTAGAGAAAGACCTGATTCTCCCTTATGT
genomic: GTGAAGAATGCAATATGGCTCTTGCCTGATATGGATTCCACAGGGAACTGgttatttttc ... cttctttcagGTACAAGCCTGGACAGGTTTATCTAGAGAAAGACCTGATTCTCCCTTATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgcaatgctattatttgttggaattggcattgagtggtctttttcttctttcagGTACAAGCCTGGACAGGTTTATCTAGAGAAAGACCTGATTCTCCCTTATGTTCCCAATGTTGATTTATGTGATGCCAAGTGTTTATCTGAGACGAATCCA
                                   tggtctttttcttctt  CT-rich tract
         tattatttgtt  TA-rich tract