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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttaatatgctataaatggcatctttcagtatctattcagtctttatatgctatttcaggatattttaggcattttgaagtttcttttacctttattggctaataccatgagctctatgaatagtgaagatgctaatatttctgtactctggtgtcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTAGCTAATGCAGTTTCCAAGACAAACATACTTGTCGTCGAAGGGTATCTATTTGAACTTCCTGATA

Basic information

species Glycine max
transcript GLYMA12G01920.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01920.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0039g01580.t01 (Vitis vinifera), 3'ss of exon 3
gtttaatatgctataaatggcatctttcagtatctattcagtctttatatgctatttcaggatattttaggcattttgaagtttcttttacctttattggctaataccatgagctctatgaatagtgaagatgctaatatttctgtactctggtgtcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTAGCTAATGCAGTTTCCAAGACAAACATACTTGTCGTCGAAGGGTATCTATTTGAACTTCCTGATA
                                    || | |   |||   || || ||    |||||   ||| || || |||    |  |||| || | |  || | | |    ||||  |  | ||     ||  ||||             ||||||||||||||| || ||| | |||||||||| ||| ||||   || |||| ||||| ||||||||||| |||||||| ||| | |||||||||||||| |
----------------------------------ccttaaatgcctatggccttttaca----atttt---catattaaactttgacatgtcttttttcggtt-tatcctaa----tatgtctgcttaaatctttaccattt-------------tcagGGCACATCTTCTACCGTTGATTATGATGCATGCTTGGCTAGCACAATTTCAAAGACGAACATACTTGTTGTCGAAGGATATTTGTTTGAACTTCCTGACA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270636|gb|BM886892.1|BM886892
EST:     TCCAGATGCCCAGCGCACAATGCTTGCATATCAG                         GGCACATCTTCAACTGTTAACTATGATGCATCCTTAGCTAATGCAGTTTCC
genomic: TCCAGATGCCCAGCGCACAATGCTTGCATATCAGgtttaatatg ... ctggtgtcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTAGCTAATGCAGTTTCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccatgagctctatgaatagtgaagatgctaatatttctgtactctggtgtcagGGCACATCTTCAACTGTTAACTATGATGCATCCTTAGCTAATGCAGTTTCCAAGACAAACATACTTGTCGTCGAAGGGTATCTATTTGAACTTCCTGATA
                           tgctaat  putative branch site (score: 2)
                              taatatttct  TA-rich tract