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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaccccctctttctactcttatgttaactttttgtttttgttattcccttgagtttgttttgaatgtgctcactattgtttcttgtgatttgcagGAAGCTGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGATTAGATGCTAGAGACCAATTTGATCTTCAACTTG

Basic information

species Glycine max
transcript GLYMA12G01350.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393229|gb|EV263104.1|EV263104
EST:     GTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACAG                         GAAGCTGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTAC
genomic: GTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCAGACAAGTACAGgcaccccctc ... tgatttgcagGAAGCTGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcccttgagtttgttttgaatgtgctcactattgtttcttgtgatttgcagGAAGCTGCAGCAGCAGCAGGTAGATAGAGGAGATTTTTCACCATGTGGTACTCCTACTGGATTAGATGCTAGAGACCAATTTGATCTTCAACTTG
                          tgctcac  putative branch site (score: 2)
 tttcttgt  putative PPT
 tttgtttt  TA-rich tract