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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcacttactctcttcaatacaaacttttctctaaattattggaatctagaatgcattatgcttcataattcatatactgatgctacttttgcccccatgctttgttgttgcttgatctagGAACTCTCGATTCATTGATG

Basic information

species Glycine max
transcript GLYMA12G01270.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298172641|gb|HO019681.1|HO019681
EST:     AGATATGAGCTTGTTTCCAGATGAATCTTTTGATGGTGTTATTGATAAAG                         GAACTCTCGATTCATTGATG
genomic: AGATATGAGCTTGTTTCCAGATGAATCTTTTGATGGTGTTATTGATAAAGgtatcactta ... cttgatctagGAACTCTCGATTCATTGATG
EST: gi|15287181|gb|BI471072.1|BI471072
EST:     AGATATGAGCTTGTTTCCAGATGAATCTTTTGATGGTGTTATTGATAAAG                         GAACTCTCGATTCATTGATG
genomic: AGATATGAGCTTGTTTCCAGATGAATCTTTTGATGGTGTTATTGATAAAGgtatcactta ... cttgatctagGAACTCTCGATTCATTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcatatactgatgctacttttgcccccatgctttgttgttgcttgatctagGAACTCTCGATTCATTGATG
      atatact  TA-rich tract