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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataaattagttatttatttgtttggcgttactccttttaagaatgagaggtgatgcaatgtgtcaattttatgataagattcttatctgtcttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTA

Basic information

species Glycine max
transcript GLYMA12G01150.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G01150.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0064g00450.t01 (Vitis vinifera), 3'ss of exon 3
-ataaattagttatttatttgtttggcgttactccttttaagaatgagaggtgatgcaatgtgtcaattttatgataagattcttatctgtcttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTA
      ||||||   | ||  ||||   | |   ||   | | |       | || | |      | |||  || | |  |  | |  | | |  || ||||  | || || |||||||| ||||| |||||||||||| ||||||||| | | ||    |  || ||    |||||||||||  | ||||||||||| ||
tgctttttagttgaattttattttgctatgatgtctcacatgtaacgattataataccagacactactttcttgttgatctcatgaattatgt-atttcagGATTAAATGGACAGTCAAATAAGAGGCTTATTTCTATGAATGAAGTTAAACAGCATAGAATGGAAGGTTCCATGTGGACTGTTCTGAAAGGCCGTGTATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208222915|gb|GE021696.1|GE021696
EST:     CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|22929655|gb|BU546794.1|BU546794
EST:     CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|197661920|gb|FD480288.1|FD480288
EST:     CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|18732508|gb|BM527083.1|BM527083
EST:     CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|192317905|gb|FK010211.1|FK010211
EST:     CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTACAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
EST: gi|13479751|gb|BG509094.1|BG509094
EST:     CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAG                         GTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA
genomic: CAGTCAAATGGACTGGCTCAAGCTCACCCAAACACATCCTGACCTTGCAGgttctcatac ... cttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaggtgatgcaatgtgtcaattttatgataagattcttatctgtcttgttccagGTCTGAAAGGGCAGTCAAACAAGAGACTTATTTCTATGGATGAAGTTAGAAAACACCAGACAGAGGGCCAAATGTGGACTGTATTAAAAGGCCGTGTTTA
                                  ttcttatctgtctt  CT-rich tract
                   aattttatgataagat  TA-rich tract