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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgtccttcacgtggactctttgaattttgtatgcatggctgaagcagGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAGCATGACTCCCCCTGTTGGTATGATGACCAAGTCC

Basic information

species Glycine max
transcript GLYMA12G00760.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00760.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv16s0022g00690.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------------------gttttgtccttcacgtggactctt-tgaattttgtatgcatggctgaagcagGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAGCATGACTCCCCCTGTTGGTATGATGACCAAGTCC----
                                                    |     ||| ||  |||  | ||||||| ||    ||   |||||||||||||||| ||||||||||| ||||| |||||||||||| || ||||  || | ||| |||| |||||||| || || |||||||||||||| ||||||     
ttcctacttcactcctttttcggctttttttttcccctgaaactaatgaaactacttatcatgtcaactgatatgaatttagtg-atat---tgaagcaggaagAAGGTTGGGTTGTGTGCAGAGTGTTCAAGAAGAGAATAGCAACGGTGAGGAAAATGAGCGAGCATGAGTCACCATGTTGGTATGATGATCAAGTCTCGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgtccttcacgtggactctttgaattttgtatgcatggctgaagcagGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACCATGCGTAAAGTGAGTGAGCATGACTCCCCCTGTTGGTATGATGACCAAGTCC
                                 tttgaattttgtat  TA-rich tract