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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattcatcttttaatttaggggttatgatgaagtaaaaaagcaatagaaagtactcagtggagccattattttaacagcttttctacattccatgcagTGAAACATGACTGCATATTCGGGGATGACTTTGATTTAAATGAAATAAGCTATGTGTCTGAG

Basic information

species Glycine max
transcript GLYMA11G37760.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6342037|gb|AW164861.1|AW164861
EST:     TTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTG                         TGAAACATGACTGCGTATTCGGGGATGACTTTGATTTAAATGAAATAAGCT
genomic: CTTTTTGAGATCCCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGgtaactggac ... ttccatgcagTGAAACATGACTGCATATTCGGGGATGACTTTGATTTAAATGAAATAAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagaaagtactcagtggagccattattttaacagcttttctacattccatgcagTGAAACATGACTGCATATTCGGGGATGACTTTGATTTAAATGAAATAAGCTATGTGTCTGAG
                          ttttaac  putative branch site (score: 2)
                                   cttttctacattcc  putative PPT
                      attattttaaca  TA-rich tract