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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttatgatttcctttatttaagaattttactgtttagttcccctgttcttattttttatcactgttttcccagGCTTCCAACTCTGGGTGGTTCTGGCTGGCTATCTGGCCTCTCTTGGTTACTTCTTCACAACTTTTTCTAGTTTATATTAATTACCAGAATGTTCCTTTCA

Basic information

species Glycine max
transcript GLYMA11G37270.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37270.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 3'ss of exon 3
gtaagtatttatg------atttcctttatttaaga-attttactgtttagttcccctgttcttattttttatcactgttttcccagGCTTCCAACTCTGGGTGGTTCTGGCTGGCTATCTGGCCTCTCT--TGGTTACTTCTTCACAACTT---TTTCTAGTTTATATTAATTACCAGAATGTTCCTTTCA-----------------------------------------------------------------------------------------------------
||||||||  ||        | |    | ||||| | | || | |||    | |   |||||||||| ||   ||||||||||||||||| ||| || |||||| ||| | |||||| |||||||||  |  ||     |||  |||| | |   ||||| |||| ||||||  |      |||||||||||                                                                                                     
gtaagtatccatttggcgtgtgtatgatgtttaatatagttaattgtaacatcctggtgttcttattctt-gccactgttttcccaggctcccagctttgggtgattcggtctggctttctggcctccatggtgacactttcagcacagcatatatttcttgtttgtattaaccattgatgtgttcctttcagGTATAACCTACTGCGTAAGAAATTTCCTGCCACATCTTTCACTGGATCTCCGGTTCTCTCTGACTCTGGATTTGACTTGTTGAACAAACTTTTAACTTAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20814888|gb|BQ299366.1|BQ299366
EST:     CCTGGGTTCTCAGAATTACCCCAAGTCAAGGTCAATTTTGTCAAGAATAA                         GCTTCCAACTCTGGGTGGTTCTGGCTGGCTATCTGGCCTCTCTTGGTTACT
genomic: CCTGGGTTCTCAGAATTACCCCAAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtattt ... gttttcccagGCTTCCAACTCTGGGTGGTTCTGGCTGGCTATCTGGCCTCTCTTGGTTACT
EST: gi|20814889|gb|BQ299367.1|BQ299367
EST:     CTGGAGTTCTCAGAATTACCCCAAGTCAATGTCAATTTTGTCAAGAATAA                         GCTTCCAACTCTGGGTGGTTCTGGCTGGCTATCTGGCCTCTCTTGGTTACT
genomic: CTGG-GTTCTCAGAATTACCCCAAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtattt ... gttttcccagGCTTCCAACTCTGGGTGGTTCTGGCTGGCTATCTGGCCTCTCTTGGTTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaattttactgtttagttcccctgttcttattttttatcactgttttcccagGCTTCCAACTCTGGGTGGTTCTGGCTGGCTATCTGGCCTCTCTTGGTTACTTCTTCACAACTTTTTCTAGTTTATATTAATTACCAGAATGTTCCTTTCA
                   ttcccctgttcttatt  CT-rich tract
                         tgttcttattttttat  TA-rich tract