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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggttaatatgttttccacttatgttgatttaagtttcataaggatggttattggtcagtgatgagctttcaaataatttgtttgtctgtccacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTGGAGGATGTTTTGGCCCACAAACAGGCCATCCCTTTCC

Basic information

species Glycine max
transcript GLYMA11G37160.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G37160.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G127521_T01 (Zea mays), 3'ss of exon 3
-ggttaatatgttttccacttatgttgatttaagtttcataaggatggttattggtcagtgatgagctttcaaataatttgtttgtctgtccacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTGGAGGATGTTTTGGCCCACAAACAGGCCATCCCTTTCC
  | |   |     |  | ||  ||||  | | | |   ||    | | |||      |  ||    |||       ||       || ||    |  ||||||||  | ||||| || |||||| | ||||||||| | ||    || || ||||| ||||| ||||||||  | |||||||| ||||||||||||||||
aagatggcacacaatatatttcagttg-ctgacgctatttattttttgatatgatgtggatatattttttgtgtatgttaacgcacctatcatgcttgcagAACACACGTGAGACAGCTTTTGCCCTTAGGAAGTTGTCACTCACCAAGGCCAAAAGTTACCTTGAGGATGTGATCGCCCACAAGCAGGCCATCCCTTTCC

upper sequence: GLYMA11G37160.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g03380.t01 (Vitis vinifera), 3'ss of exon 2
-ggttaatatgttttccacttatgttgatttaagtttcataaggatggttattggtcagtgatgagctttcaaataatttgtttgtctgtccacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTGGAGGATGTTTTGGCCCACAAACAGGCCATCCCTTTCC
 || ||  ||||| | || || |||    ||   | | | ||     |||  | || |           |   ||   |  ||| | | |    |  | ||||||| |||||||||||   |||||| |||||||||||  |||  || || ||||| ||  ||||||||||| ||| |||||| || ||||| |||||| 
tggatatcatgttgttcatttttgtatccttctctctgaaaatctgagtttattgtgaact-cacatcattgtatttctcatttctatattgtgtcaatagAACACAAGGGAGACTGCTCATGCCATTAGGAAGTTGCCTTTGGCCAAGGCCAAAAGGTATTTGGAGGATGTTCTGGTCCACAAGCAAGCCATACCTTTCA

upper sequence: GLYMA11G37160.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv01s0010g03370.t01 (Vitis vinifera), 3'ss of exon 4
ggttaatatgttttccacttatgttgatttaagtttcataaggat---ggttattggtcagtgatgagctttcaaataatttgtttgtctgtccacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTGGAGGATGTTTTGGCCCACAAACAGGCCATCCCTTTCC
  |||  ||||| | || || |  |    |    |   | || ||    |||  |||| |    | |    |   |||  |  |||   |     ||  | ||||||| |||||||||||   |||||| |||||||||||  |||  || || ||||| ||  ||||||||||| ||| |||||| || ||||| |||||| 
--ttatcatgttgttcattttttatatccttctgtatgtgagaatctgagtttatggtgaact-taaatcattgtatatctcatttccatactgtctcaatagAACACAAGGGAGACTGCTCATGCCATTAGGAAGTTGCCTTTGGCCAAGGCCAAAAGGTATTTGGAGGATGTTCTGGTCCACAAGCAAGCCATACCTTTCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209723027|gb|BW668873.1|BW668873
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|209707520|gb|BW664979.1|BW664979
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|298191515|gb|HO038994.1|HO038994
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|58018377|gb|CX705119.1|CX705119
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192299836|gb|FG990073.1|FG990073
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|15285877|gb|BI469768.1|BI469768
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|31463467|gb|CD405495.1|CD405495
EST:     CCACCAAGTCCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCACCAAGTCCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213620278|gb|DB961423.1|DB961423
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192334007|gb|FK024820.1|FK024820
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|58021552|gb|CX708293.1|CX708293
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213618470|gb|DB967707.1|DB967707
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213602730|gb|DB968928.1|DB968928
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192315909|gb|FK007070.1|FK007070
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|209728279|gb|BW658491.1|BW658491
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|10843191|gb|BF066504.1|BF066504
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192330296|gb|FK019861.1|FK019861
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGCTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|209696456|gb|BW655663.1|BW655663
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|298163726|gb|HO012459.1|HO012459
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192300828|gb|FG989725.1|FG989725
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|298191987|gb|HO036069.1|HO036069
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192304747|gb|FG998777.1|FG998777
EST:     GAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: GAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|26059831|gb|CA802745.1|CA802745
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|9986842|gb|BE660950.1|BE660950
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213592920|gb|DB966025.1|DB966025
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|58016113|gb|CX702855.1|CX702855
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213603275|gb|DB970394.1|DB970394
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213598906|gb|DB971934.1|DB971934
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192304746|gb|FG998776.1|FG998776
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|14991547|gb|BI317220.1|BI317220
EST:     CCTGCAAGGCCAGAGGCGCTGACCTCAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|24205425|gb|BU964678.1|BU964678
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|209701081|gb|BW652167.1|BW652167
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|209697265|gb|BW675476.1|BW675476
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|192315910|gb|FK007071.1|FK007071
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213593378|gb|DB973571.1|DB973571
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|151403328|gb|EV273138.1|EV273138
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|151407792|gb|EV277607.1|EV277607
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|7685510|gb|AW756158.1|AW756158
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213611894|gb|DB964814.1|DB964814
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|58014186|gb|CX700928.1|CX700928
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
EST: gi|213599443|gb|DB970377.1|DB970377
EST:     CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAG                         AACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT
genomic: CCTGCAAGGCCAGAGGCGCTGACCTTAGAGTGCATTTCAAGgtacttagat ... cacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttattggtcagtgatgagctttcaaataatttgtttgtctgtccacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTGGAGGATGTTTTGGCCCACAAACAGGCCATCCCTTTCC
                                           tccacttc  CT-rich tract
                     tttcaaataatttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggttaatatgttttccacttatgttgatttaagtttcataaggatggttattggtcagtgatgagctttcaaataatttgtttgtctgtccacttcacagAACACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCCCTGGTTAAAGCTAAAAGATACCTGGAGGATGTTTTGGCCCACAAACAGGCCATCCCTTTCC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - ccactta
- - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - gatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatgag