1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgttcatacatacataaaggactgaggtgtagttatattatgcttcctttagagctacttttatcatcaaatctctatgtattcatttactactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCAC
species | Glycine max |
transcript | GLYMA11G36990.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCG AAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTEST: gi|9899202|gb|BE608100.1|BE608100
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGgtatgatatt ... tactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
EST: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCG AAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTEST: gi|298190731|gb|HO032852.1|HO032852
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGgtatgatatt ... tactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
EST: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCG AAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTEST: gi|192328242|gb|FK020461.1|FK020461
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGgtatgatatt ... tactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
EST: CTTGTAGCATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCG AAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTEST: gi|254331208|gb|GR845787.1|GR845787
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGgtatgatatt ... tactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
EST: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCG AAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTEST: gi|13312501|gb|BG406152.1|BG406152
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGgtatgatatt ... tactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
EST: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCG AAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTEST: gi|192328139|gb|FK022848.1|FK022848
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGgtatgatatt ... tactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
EST: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCG AAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
genomic: CTTGTAACATGCGTAATTGCACTCAACCAAGGCCGGCTGATCATAATTCGgtatgatatt ... tactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCT
cctttagagctacttttatcatcaaatctctatgtattcatttactactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCAC
ttttatcatcaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgttcatacatacataaaggactgaggtgtagttatattatgcttcctttagagctacttttatcatcaaatctctatgtattcatttactactatccagAAATCTGCTGCCAAGCCTCTACAAGCTCCGCAGGGTTATTCATCCTCAGCTCCTTATTTAGGTTCTAATACCCCCTCTTCAATATATCTTGGTGTTCCAC
- - catacat
- - - - - - - - - - -ctgaggt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gctactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtattc