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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcatctagaagctagagttttgtaaaactgtttacacagaatcgtttaataattgcttgtgcattgaacagtacatcatttacatgtgttatatcattgactagcaacaattctatttgaaactacctatgttagcatttcaatatcaaaatttctaattatattatattgtattctgcttcacattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCAACCACGTCACAATACCATGATTAGCACATCATGGGGTGCTCCTAGTGCT

Basic information

species Glycine max
transcript GLYMA11G36670.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36670.1 (Glycine max), 3'ss of exon 3
lower sequence: AT4G14030.1 (Arabidopsis thaliana), 3'ss of exon 3
gtactcatctagaagctagagttttgtaaaactgtttacacagaatcgtttaataattgcttgtgcattgaacagtacatcatttacatgtgttatatcattgactagcaacaattctatt-tgaaactacctatgttagcatttcaatatcaaaatttctaattatattatattgtattctgcttcacattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCAACCACGTCACAATACCATGATTAGCACATCATGGGGTGCTCCTAGTGCT
                                                                                                                 ||  ||||   |||| |   || ||    ||| | | ||    |  ||| |  |  |||||  | |  || ||    |   | |||||||||||||| || || |||||  | | ||| ||||| |||||||||||||| || ||||| |||||||| |||||||| ||||| || ||||  || 
---------------------------------------------------------------------------------------------------------------gtatcttattgcaaaacaaagcattttc-tgttttagtttcttg-tcgctattagtcatatatcat-tgttggttattgt--atcagGTGGGAGAAACCAGGACATAGTCCTTTGTATGGGTATGATTTTTGGTACCAACCTCGGCACAAGACCATGATCAGCACATCTTGGGGAGCACCTAAAGCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814252|gb|BI786527.1|BI786527
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
EST: gi|18726732|gb|BM523722.1|BM523722
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCTGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGCCCACTATTTGGGTATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
EST: gi|308099231|gb|HO761409.1|HO761409
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGT
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGT
EST: gi|213604534|gb|DB970654.1|DB970654
EST:     GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAG                         GTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA
genomic: GCAGGAAATGGATTTCTTCTTCTTGATTCAGAGTTTAATGTGAAGGGAAGgtactcatct ... cattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaatatcaaaatttctaattatattatattgtattctgcttcacattggttagGTGGGAGAAACCGGGTCACAGTCCACTATTTGGATATGACTTTTGGTACCAACCACGTCACAATACCATGATTAGCACATCATGGGGTGCTCCTAGTGCT
              ttctaat  putative branch site (score: 2)
     tatcaaaatttctaat  TA-rich tract