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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacttacttactccatacttacttacatacttacttattgattccccaaccacacacatttgaatgtttctgtgcctagtcagTCAGAAATCACGAGGAGGATGTACAACTCCAACTCCAACTCCGCTGCTCATGATATCGATGATGCAAAATCTGATACTCAGACTCGGCTCTTGCTTTCTA

Basic information

species Glycine max
transcript GLYMA11G36520.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G36520.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv05s0029g01350.t01 (Vitis vinifera), 3'ss of exon 3
---------------gtaacttacttactccatacttac-ttacatacttacttattgattccccaaccacacacatttgaatgtttctgtgcctagtcagTCAGAAATCACGAGGAGGATGTACAACTCCAACTCCAACTCCGCTGCTCATGATATCGATGATGCAAAATCTGATACTCAGACTCGGCTCTTGCTTTCTA--
                 || ||  ||  |  ||   |||  | ||   ||   |||    | |     |    |  | ||||||||| |||| ||||||||||||||||||| |||||| ||   || || |          || ||  | | |    || |  |||    |     ||||   || |   |  ||       
aaaataaaaaatatatcaagttgttt-ttatatttctacactgcacctttctgtataatattctttttcctgtatttctgaatgtttatgtggctagtcagTCAGAAATCACAAGGAGGTTGGGTAAATCTACAAGTCCTGACGATGAACCTAAATCTGAAG--GCAGTGGCATGCTCTCAAGATCAGAAATCACTCATGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttacttattgattccccaaccacacacatttgaatgtttctgtgcctagtcagTCAGAAATCACGAGGAGGATGTACAACTCCAACTCCAACTCCGCTGCTCATGATATCGATGATGCAAAATCTGATACTCAGACTCGGCTCTTGCTTTCTA
      ttattgatt  TA-rich tract