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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatttttatcagagtaaaactgaccacatcttgcaagtcttgtttatgactaaatgtttttttattgtcgctcatagGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAG

Basic information

species Glycine max
transcript GLYMA11G35600.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35600.1 (Glycine max), 3'ss of exon 3
lower sequence: AT2G40290.2 (Arabidopsis thaliana), 3'ss of exon 3
gtaaatatttt--tatcagagtaaaactgaccacatcttgcaagtcttgtttatgactaaatgtttttttattgtcgctcatagGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAG
||| ||| |||  | || |        | | |   |  | | |   || |||    |||| | ||      ||   | |  |||||||||||||| || || |||||  | ||||||||||| ||| | ||||||||||| ||||| ||  ||||||| || |||||  |||||||  |||| |
gtatatactttgttctctggcattgttttagcggttagtactaactttatttggtgctaa-tcttacaagttttctgtttgtagGTGACTAAGGTTGTACCTGCTGTTACGGAAGAAGTGAAAGATGCACTTGTGAAGAACATTAGGAGGAGAATGACACCACAACCAATGAAAATCCGGGCTG

upper sequence: GLYMA11G35600.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv13s0067g01710.t01 (Vitis vinifera), 3'ss of exon 3
gtaaatatttttatcagagtaaaactgaccacatcttgcaagtcttgtttatgactaaatgtttttttattgtcgctcat-----agGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAG
||||   || ||     ||  || || |||| ||  |     || |||| ||||| |       ||||  |||| |||||     ||||||| |||||||| || ||| |||| || |||||||||||| || | || ||||||||||| ||| ||||||| || ||||| ||||||||| |||| |
gtaatctttgtttatgaag--aacctcaccatattct-----tcctgttgatgacaatggccacttttcatgtccctcattttatagGTGACAAAGGTGGTCCCTGCTATATCTGAGGAAGTGAAGGATGCTTTGGTAAAGAATATTAGGAGAAGAATGACTCCACAACCATTGAAAATTCGGGCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208137298|gb|GD934602.1|GD934602
EST:     TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAG                         GTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG
genomic: TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAGgtaaatattt ... tcgctcatagGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG
EST: gi|151396190|gb|EV266067.1|EV266067
EST:     TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAG                         GTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG
genomic: TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAGgtaaatattt ... tcgctcatagGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG
EST: gi|254323854|gb|GR840387.1|GR840387
EST:     TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAG                         GTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG
genomic: TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAGgtaaatattt ... tcgctcatagGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG
EST: gi|192306825|gb|FK002995.1|FK002995
EST:     TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAG                         GTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG
genomic: TAAGTACTCTCACTCGTGAAGTTAAGGAAGTTGGCCCTGACGGGCAAGAGgtaaatattt ... tcgctcatagGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accacatcttgcaagtcttgtttatgactaaatgtttttttattgtcgctcatagGTGACTAAGGTGGTGCCAGCTGTATCAGAAGAAGTGAAGGATTCTCTTGTGAAGAATATTAGAAGACGAATGACCCCCCAACCCTTGAAAATTAGGGCAG
                         gactaaa  putative branch site (score: 2)
                 ttgtttatgactaaat  TA-rich tract