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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttaactaaaatctctctctctctctctcttaagtatcaaatttaagaattttctgaagcctaataagttaatgaggcttggcatttttgttatacagTGGATCTTCTGGGTTGGACCTTTCGTTGGTGCAGCTCTTGCGGCTCTTTACCACCAAGTTGTAATCAGAGCCATTCCCTTCAAATCCAGTTAATTAATTG

Basic information

species Glycine max
transcript GLYMA11G35030.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209703049|gb|BW656082.1|BW656082
EST:     GTCTCGGTGCTGCCATCATCTTCAA-AAAGACCTTGGCTGGGATGATCAC                         TGGATCTTCTGG
genomic: GTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCACgtatgttaac ... tgttatacagTGGATCTTCTGG
EST: gi|9898746|gb|BE607714.1|BE607714
EST:     GTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGAAGATCAC                         TGGATCTTCTGGGTTGGACCTTTCGTGGGTGCAACTCTTGC
genomic: GTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCACgtatgttaac ... tgttatacagTGGATCTTCTGGGTTGGACCTTTCGTTGGTGCAGCTCTTGC
EST: gi|4313534|gb|AI460653.1|AI460653
EST:     GTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCAC                         TGGATCTTCTGGGTTGGACCTTTCGTTGGTGCAGCTCTTGCGGCTCTTTAC
genomic: GTCTCGGTGCTGCCATCATCTTCAACAAAGACCTTGGCTGGGATGATCACgtatgttaac ... tgttatacagTGGATCTTCTGGGTTGGACCTTTCGTTGGTGCAGCTCTTGCGGCTCTTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagaattttctgaagcctaataagttaatgaggcttggcatttttgttatacagTGGATCTTCTGGGTTGGACCTTTCGTTGGTGCAGCTCTTGCGGCTCTTTACCACCAAGTTGTAATCAGAGCCATTCCCTTCAAATCCAGTTAATTAATTG
                                         tttttgtt  CT-rich tract
                  taataagttaatga  TA-rich tract