1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtattaatgtactcatattatgtttgtttttatcactttttgtgaatatgttttttctttcccttatattgcatgcaatgtccctcccatttacgccttactgcttgtatgtttcagTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTG
species | Glycine max |
transcript | GLYMA11G34130.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAG TTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCEST: gi|192299785|gb|FG987801.1|FG987801
genomic: TCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGgtattaatgt ... tatgtttcagTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTC
EST: TCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAG TTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCEST: gi|151409236|gb|EV279044.1|EV279044
genomic: TCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGgtattaatgt ... tatgtttcagTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTC
EST: TCATGCAACACGTCCTAGTAATTCCACTTCACTCACTTTTCCCGTGACAG TTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCEST: gi|9899003|gb|BE607971.1|BE607971
genomic: TCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGgtattaatgt ... tatgtttcagTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTC
EST: TCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAG TTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTC
genomic: TCATGCAACACGTCCTAGTAATTCCAATTCACTCACTTTTCTCGTGACAGgtattaatgt ... tatgtttcagTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTC
cttatattgcatgcaatgtccctcccatttacgccttactgcttgtatgtttcagTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTG
gccttac putative branch site (score: 3)
tatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaatgtactcatattatgtttgtttttatcactttttgtgaatatgttttttctttcccttatattgcatgcaatgtccctcccatttacgccttactgcttgtatgtttcagTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG