Sequence
atgc intronic sequence ATGC exonic sequence...actgagaaatcatttgcatcgtgaaatcttgtcctgacttacggctataagtaatatgttgtttcaaataataaaattcactgttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT
Basic information
species | Glycine max |
transcript | GLYMA11G33660.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA11G33660.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os06g14490.2 (Oryza sativa), 3'ss of exon 4
----actgagaaatcatttgcatcgtgaaatcttgtcctgacttacggctataagtaatatgttgtttcaaataataaaattcactgttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT
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ggttattatgacatgaataga--tgacagattttcttttggcggagag--agaggtcagatattgtgccgcattgacaataactgtagtactactcatttgtagATGTGGAAGATTCCCTCCTGAGGTGAGAACTGCTATTCCAGTGGAAGGCCGATTTGAGCATATTGTGTTGTCATGCAGTACTACTTCTGATCATGCGATT
upper sequence: GLYMA11G33660.1 (Glycine max), 3'ss of exon 3
lower sequence: AT5G37710.1 (Arabidopsis thaliana), 3'ss of exon 3
actgagaaatcatttgcatcgtgaaatcttgtcctgacttacggctataagtaatatgttgtttcaaataataaaattcactg-ttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT---------
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--------------------gtaataatgaagttagtgtggcatttcttagcaat-ttttgtttgtttt-------tcctctgattattttttgtatttagatgtggaagGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATA
upper sequence: GLYMA11G33660.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv14s0006g01030.t01 (Vitis vinifera), 3'ss of exon 3
actg-agaaatcatttgc-atcgtgaaatcttgtcctgacttacggctataagtaatatgttgtttcaaataataaaattcactgttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT
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cctgcaaaagtcctctattatgaaaggagattgatagtgtcatctactaaaagagttatacttcctctga-aactgaattttttgctgcttg-tgatcatagATGTGGAAGGTATCCACCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGGTTTGAGCAAATCGTTTTATCATGCAATGCCACATCTGATCATGGAATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|51335105|gb|CO978971.1|CO978971EST: CTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAG ATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAG
genomic: CTTTATGCACCTGGAAGAATGTACCATATTGTGGAGAGAAAATTTTGCAGgtattgactt ... gtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataagtaatatgttgtttcaaataataaaattcactgttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT
taatatgttgtttcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
actgagaaatcatttgcatcgtgaaatcttgtcctgacttacggctataagtaatatgttgtttcaaataataaaattcactgttgcttggtgtacacagATGTGGGAGATTTCCTCCTGAAGTGAGGACTGCTATTCCCGTTGATGGAAGATTTGAGCATATAGTCTTGTCCTGTAATGCAACATCAGATCATGGAATT
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