1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctaaaaagaaaagaaaaaaaaatcttcttagggggagaagaggttggcttctttccatagtttgctatttttaaagcttgttctgcttgcccattgcagGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGTTTGAAAAGGCAGAGGTTAAATGACCCCATGATTCGTGGTTCTGATGGAC
species | Glycine max |
transcript | GLYMA11G33480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAG GACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGTEST: gi|9986365|gb|BE660473.1|BE660473
genomic: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAGgttaggttct ... cccattgcagGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGT
EST: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGNTCCTCGTTTAAATGAG GACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGNTATGATGGTEST: gi|308098030|gb|HO761201.1|HO761201
genomic: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAGgttaggttct ... cccattgcagGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGT
EST: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAG GACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGTEST: gi|308098031|gb|HO761202.1|HO761202
genomic: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAGgttaggttct ... cccattgcagGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGT
EST: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAG GACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGT
genomic: TTGATAGCAGAGGACCTGAAGTGATGCGCATTGTTCCTCGTTTAAATGAGgttaggttct ... cccattgcagGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGT
tggcttctttccatagtttgctatttttaaagcttgttctgcttgcccattgcagGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGTTTGAAAAGGCAGAGGTTAAATGACCCCATGATTCGTGGTTCTGATGGAC
cttgccc CT-rich tract
tttgctatttttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctaaaaagaaaagaaaaaaaaatcttcttagggggagaagaggttggcttctttccatagtttgctatttttaaagcttgttctgcttgcccattgcagGACATAAATGAAGAATGGATTTCAGACAAAACCCGCTTTTGTTATGATGGTTTGAAAAGGCAGAGGTTAAATGACCCCATGATTCGTGGTTCTGATGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - aagaaaa
- - - - - - - aaaaaaa
- - - - - - - - - - - - - - - -gggggag
- - - - - - - - - - - - - - - - - - - - gaggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgct