1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaactagcatcaatacataactctgttactgatgaaatttctattgtttgtaaagatgccatagatgcaatgtttaccatccgattctctgcttcttcagCCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAA
species | Glycine max |
transcript | GLYMA11G29490.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATGCATCAATGGGCCAAAAGAAAAGCTAGATTCAACTGTTATCAGCCAG CCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGTEST: gi|37997155|gb|CF808744.1|CF808744
genomic: TATGCATCAATGGGCCAAAAGAAAAGCTAGATTCAACTGTTATCAGCCAGgtatatactt ... gcttcttcagCCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGT
EST: TATGCATCAATGGGCCAAAAGAAAAGCTAGATTCAACTGTTATCAGCCAG CCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGT
genomic: TATGCATCAATGGGCCAAAAGAAAAGCTAGATTCAACTGTTATCAGCCAGgtatatactt ... gcttcttcagCCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGT
gtttgtaaagatgccatagatgcaatgtttaccatccgattctctgcttcttcagCCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAA
ttctctgcttcttc CT-rich tract
aatgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactagcatcaatacataactctgttactgatgaaatttctattgtttgtaaagatgccatagatgcaatgtttaccatccgattctctgcttcttcagCCAGCTATTTATGTCACAAGTCTTGCTGCTGTAGAGCTACTTCGTGCGCGTGATGGAGGTCAGCAGATTATTGACTCAGTTGATGTTACATGTGGTTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - caataca
- - - - - - - - - - - - - -actgatg
- - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatccg