1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctcaaaccatttttgtgatgtcataacaaccttcaattacttgtatatcttccctggtttgattttagaaaaataataacatgaagttattgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAG
species | Glycine max |
transcript | GLYMA11G21650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAG GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATEST: gi|192334799|gb|FK025948.1|FK025948
genomic: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAGgtacaaaaaa ... tgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAAT
EST: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAG GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATEST: gi|7283519|gb|AW596125.1|AW596125
genomic: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAGgtacaaaaaa ... tgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAAT
EST: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAG GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATEST: gi|7795492|gb|AW780889.1|AW780889
genomic: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAGgtacaaaaaa ... tgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAAT
EST: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAG GAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCATAGAATEST: gi|192334800|gb|FK025949.1|FK025949
genomic: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAGgtacaaaaaa ... tgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAAT
EST: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAG GAATCTAAATTTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAAT
genomic: ATTACTGTATGCCAGAAATGACTGGCTATGATCTGCTGAGAAAGATCAAGgtacaaaaaa ... tgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAAT
tatcttccctggtttgattttagaaaaataataacatgaagttattgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAG
attttagaaaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaaaccatttttgtgatgtcataacaaccttcaattacttgtatatcttccctggtttgattttagaaaaataataacatgaagttattgatttgcagGAATCTAAATCTCTTAAAGACATACCAGTGGTGATTATGTCCTCAGAGAATGTCCCAGCAAGGATTAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
-tcaaacc
- - - - - - - -tgatgtc
- - - - - - - - - - - - - - accttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgaag