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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgaagactaatactttctgatatttttaatgtttgctgtcttttctttcttacatatgtttatatcaaatctctggcaattcaatttttgttttctatagGATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTT

Basic information

species Glycine max
transcript GLYMA11G19970.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19970.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv03s0017g01120.t01 (Vitis vinifera), 3'ss of exon 4
tgaagactaatactttctgatatttttaatgtttgctgtcttttctttcttacatatgtttatatcaaatctctggcaattcaatttttgttttct----atagGATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTT
| |   |  | | |||    ||||    ||||| | | | ||   | |||  || || | | ||| |  || |||    | | | |||| | ||||     |||||||||||||| ||||| ||||| ||||| || |||||||||||| | || ||||  || ||||| 
tcatagcagagaattttaagtatt----atgttggttatattaattctctagcacatctctttataacttccctgatgctgccaattttttcttcttgtggtagGATCCCAATTCGAAGCATTTAGGAACTACGGTTTGGGATGCATCAATGGTATTTGTGAAATTTCTG

upper sequence: GLYMA11G19970.2 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0061g00490.t01 (Vitis vinifera), 3'ss of exon 4
tgaagactaatactttctgatatttttaatgtttgctgtcttttctttcttacatatgtttatatcaaatctctggcaattcaatttttgttttct----atagGATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTT
   | |  |  |  || | |   ||   ||||| | | | ||   | |||  || || | | ||| |  || |||    | | | |||| | ||||     |||||||||||||| ||||| ||||| ||||| || |||||||||||| | || ||||  || ||||| 
-tcatagcagaatattttaaggatt---atgttggttatattaattctctagcacatctctttataacttccctgatgctgccaattttttcttcttgtggtagGATCCCAATTCGAAGCATTTAGGAACTACGGTTTGGGATGCATCAATGGTATTTGTGAAATTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13478092|gb|BG507710.1|BG507710
EST:     CATTTGAGATGCCATTGGAGGTTATGGGCCATGAGTTGCAGTTTTCTCAT                         GATCCCAATTCCAAGCACTTANGGACTACAGTATGGGATGCATCACTTGTG
genomic: CATTTGAGATGCCATTGGAGGTTATGGGCCATGAGTTGCAGTTTTCTCAGgtattatact ... ttttctatagGATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcttacatatgtttatatcaaatctctggcaattcaatttttgttttctatagGATCCCAATTCCAAGCACTTAGGGACTACAGTATGGGATGCATCACTTGTGTTTGCCAAGTTTCTT
 ttcttac  putative branch site (score: 2)
                                       tttttgttttctat  putative PPT
                                aattcaatttttgttt  TA-rich tract