Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacgtctactttcatactatcttctgaatctattaaagtatttttccttctacactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG

Basic information

species Glycine max
transcript GLYMA11G19820.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G19820.1 (Glycine max), 3'ss of exon 3
lower sequence: LOC_Os02g57670.1 (Oryza sativa), 3'ss of exon 3
-tacgtctactttcatactatcttctgaatctattaaagtatttttccttcta--cactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG
  | |  |  || | ||| |   ||    || || | |||||     |||  |  || | ||    || || || | || | |  |  |||    ||  |||||||||||||||||||||||||||||| |   ||||||||||| ||||||| ||||| |||   ||||||||||| ||||||||||| || ||||| ||
gcatgatttgttcc-taccaatatcattttccataagagtataagaactttcatccagtgttagcataatcttaccctgttgagca--tttgtgcttgagtagGTAAAAGAAGAGGCACAGCAACTTGCCCGTGTTTTTGAAACTATTGGGGCATTCAAAGTGCCACGTAAAGGTGGGAAAGGAAAACAGATATTTGGGAG

upper sequence: GLYMA11G19820.1 (Glycine max), 3'ss of exon 3
lower sequence: GRMZM2G096962_T01 (Zea mays), 3'ss of exon 3
---tacgtct--actttcatactatcttctgaatctattaaagtatttttccttctacactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG
   || |||   |   | |||   || |   | ||||| || | ||||||     |    | | ||| || | ||  | |  |||  ||   |  ||||   |||||||||||||| || || |||||||||| | ||||||||||  |||| ||||||||  |    || |||||||| ||||||||||| || ||||| ||
atttaagtcctaagcatgatatgttcatgaaattctatcaatgcatttttatcagt---ttttgtttataattatggcct--taagaagtcctctatttacatagGTAAAAGAAGACGCGCAACAACTTGCTCGAGTTTTTGAAACCATTGGCGCTTTCAAACTCCCTCGCAAAGGTGGAAAAGGAAAACAGATCTTTGGGAG

upper sequence: GLYMA11G19820.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv06s0061g00770.t01 (Vitis vinifera), 3'ss of exon 3
--tacgtctactttcatactatcttctgaatctattaaagtatttttccttctacactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG
  |   |  |    | || | | | || |   ||     ||| | |      |   |   |||  ||    |  | || |   ||  ||  | |  ||| |||||||||||||||| || ||| | |||||||| |||||||||||||| |||||||||||||| || |||||||| |||||||| ||||| ||||||||
agtttatggatgcacttattttttcctcaccataaatgtgtactgtcataaatttccctatttgataaatttgacttgtttcttatatt--cttccctgcagGTAAAAGAAGAGGCCCAACAAATGGCTCTAATGTTTGAAACTGTTGGAGCTTTCAAGGTGAAACGCAAAGGTGGAAAAGGAAAGCAAATCTTTGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151398344|gb|EV268215.1|EV268215
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298181314|gb|HO022753.1|HO022753
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGNNNNNNNCGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGC
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAA-CGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGC
EST: gi|9902786|gb|BE611754.1|BE611754
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|58024346|gb|CX711087.1|CX711087
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|58017919|gb|CX704661.1|CX704661
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|31561330|gb|CD487168.1|CD487168
EST:     GGAAATGACCGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAA-GATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|7686157|gb|AW756805.1|AW756805
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|120494977|gb|EH223144.1|EH223144
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|31461410|gb|CD403438.1|CD403438
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|10847510|gb|BF071557.1|BF071557
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|192312931|gb|FK005487.1|FK005487
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298192960|gb|HO033394.1|HO033394
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298182190|gb|HO026365.1|HO026365
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|207699160|gb|GD679382.1|GD679382
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298169407|gb|HO020767.1|HO020767
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298174319|gb|HO017655.1|HO017655
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|7692630|gb|AW760732.1|AW760732
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|10232731|gb|BE801619.1|BE801619
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|192329306|gb|FK020225.1|FK020225
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|5508879|gb|AI855437.1|AI855437
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|13479522|gb|BG508865.1|BG508865
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|208338534|gb|GE137792.1|GE137792
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTT-GAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|120529435|gb|EH257569.1|EH257569
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|151393442|gb|EV263317.1|EV263317
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGNNNNNNNCGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGC
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAG-AAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGC
EST: gi|5760324|gb|AI965751.1|AI965751
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|192323328|gb|FK018979.1|FK018979
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTATTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|10843800|gb|BF067055.1|BF067055
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|209725249|gb|BW672724.1|BW672724
EST:     CTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: CTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298175487|gb|HO018198.1|HO018198
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|23063923|gb|BU578697.1|BU578697
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|120493743|gb|EH221910.1|EH221910
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGCCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCAAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|31458412|gb|CD400440.1|CD400440
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|58015022|gb|CX701764.1|CX701764
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298183049|gb|HO028312.1|HO028312
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|120493847|gb|EH222014.1|EH222014
EST:     AAGGAAATGAAGATAGAAGAAGAAAGGATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCAAATTTTTGAAACTGTTGGGGCT
genomic: AAGGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|120493827|gb|EH221994.1|EH221994
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCAAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|209725248|gb|BW672723.1|BW672723
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|298195310|gb|HO043838.1|HO043838
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|9899851|gb|BE608819.1|BE608819
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|10232284|gb|BE801172.1|BE801172
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
EST: gi|13181428|gb|BG352698.1|BG352698
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGACAAAACGG                         GTTAAAAGAAGAGGCACAGCAAACTTGCTCTAATTTTTGAAACTGTTGGGG
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGT-AAAAGAAGAGGCACAGCAA-CTTGCTCTAATTTTTGAAACTGTTGGGG
EST: gi|31312456|gb|CD397659.1|CD397659
EST:     GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAACAAACGG                         GTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT
genomic: GGAAATGAAGATAGAAGAAGAAAGAATTGAGGCTGAGAAAAAACGGgtaatttttc ... atttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctacactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG
                             tggtaac  putative branch site (score: 2)
                                            catttct  putative PPT
          tatttttgta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tacgtctactttcatactatcttctgaatctattaaagtatttttccttctacactatttttgtagtcatatcatggtaactaggtttacatttctgtagGTAAAAGAAGAGGCACAGCAACTTGCTCTAATTTTTGAAACTGTTGGGGCTTTCAAGGTGAAGCGTAAAGGTGGTAAAGGAAAACAAATTTTTGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - -tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catatca